RNA id: XM_036968811.1



Basic Information


Item Value
RNA id XM_036968811.1
length 9231
RNA type mRNA
GC content 0.54
exon number 24
gene id wu:fi04e12
representative False

Chromosome Information


Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 35582273 ~ 35618259 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGTTGATGAAAGGTGTGGTCTGTTTTGTTTGGCCAAAAACGACACTTTCCCGTGTTGCAGATCAAGTCGGTGCTGCCTAGGGACTCTGCTCCGCAGACAGGTGCAGGAGGGATCACATCAACCGCTTCAGACAGTCCCCTCTGACAGCTTTTGCGCACTGCAGCCAGGATTGCAAACTCTTCGTCCACCATTTTTCTCCAGCGGAGTTTTATAACTTTTTGGATCCAGAGATGAGTCTATACGGGTCCCAGGGGGTGTTTTATGTCAGCCGCAGTATCGGGTCCAGGCCCGACCTGAGCTGCGGAACTGGACAATATGCCCAGAGCGAAGTGCACGGTGGTAGTGGATACGGACAGGAGTACATGGACGATAATACTTACAGCTACTCAAAGGCTTCCATgcgaggtggtggtggaggacagGGACAGTTCCCCCCCAGTGGCCTCCACCAGAAGGCGTACATCCTGCAGGGCCAGTGTCAGGACAACCTGAGGAAAGCAGAACACTACCTACAGGCTGGCAGCGATTCTGGGCGCGGCACAGTGGAGGCAGATCACTACATGGCCCTGGCCAGGGAGACCATAGAGCAGCTGAAGGCCTGTGCTCTGGACCTCAGACAGATGGGACAACCCAATGACAGCGTGGTCCGAAGTGTGGAGATGTGTCGGGACCAGTTGACGGGAGTCCACATGGCCATAAACGGAACCATGCAAAGGCGGAGCCGGGGGAGCAGAGGGAGTGGCGCTTGGGAGGAAGCTGGGTGGAGCTTCAACGAGGCCATGGCCTGGATTGGACACCAGAAGCATCTGATAGAGACCGCTCAGTGGGGAGATAACTCTGCAGACATTGAGCAGCAGCTGATCAGCCACAGCAAGTTCCACAGCTCGATACAGAGAAGCCCCGAGGTGGACAAGGCCAAGGTTGAACTGATTATGAAAGGAGACAAGGCCAACCAGTATGCTCTGGATCAGGAATGGGACATGCTGCAGAAAATGTCTCATGGTCGTAGCAACCAGCTGAGGGAGATGCAGCAGATCATTGAGGCGATCAGTAAACAGATCATGTGGGTGAacgtgagagaggaggaggagctggtgTTCGACTGGGGGGACAAGAACATCGACCTCTACATCCCCAAGAAGCAGGAGAGCTACTCGaaACTGATGAGTGCCCTGGAGGAGAAGGATAAGGACCTGAATAAACTGAAGCTGAAAGTGGACAGCCTTCTGAAGAACCCCCACCCTGCCTCTGACAAGATCGAGGCCTACATGGACACTCTGCAGACCCAGTGGAGCTGGCTCCTCCAGATCACCAAGTGTATCCATGTCCACCTGAAGGAGAATGCTGACTACAGCGAGTTCTTCAAGGAGGCCAATGAGATGTACAATAAGCTGCAGAAGGCGCATGAGAACATCCGTAAGAAGTTCACCAGCGACAGAAACACGCCCCTTGAAAACTTGCTGGAACTACTCAAAGGCCTGGAGAAAGAGAAGGAGCGAATCATGGAGAATAAGAGGCAGGTGCAGCACCTGGTCAACAAGTCCAAGAGCATCGTGAGGCTCAGACCACGTAACCCTGAAGAGGAGAAGAGCTGTAGTCCTGTTATGGTACAGGCCCTGTGTGACTTCAAACAAGACCAGAAGGTGATTCTGAAGGGCAACGAGGGCATACTGAAAGACAACTCCCAGCGCAGTAAGTGGCAGGTAATAGGACCAGGAGGACTGGACATGCTGgtgccctctgtctgtctgctggtgcCACCGCCCAACTCCCTTGGCATCAACCTGGCCAacaaGAATGAGCAGTACTATGAGGCCATCCTGTCTGTGTGGAATCAGCTCTACATCAACATCAAGAGTCTCATCTCCTGGCAGTACTATGTCCAGGACCTCACACGTATCAACTCACTCACTGTCACCATGCTGTCCCGTATGCGTCCCGAGGAGTACCGCAGCATCCTGAAGAGTCTGGAGGCACACTACTCAGAGTTCACCCACTGTTGCCATGGCTCCGAGATGTTCAAGGACGAGGACAAGCGGAGCATCGAGAGCCAGTACACTGGAGCCCATGCTCACTACGACCGCCTGCTGGTCCAGCTACCTGTTTACACTGCACAACAGACCGGCAACGAGGAGAAGATCAAAGCAGAGGAGGAAGCCAGGATACTGGCGGCAGAGAAAGAGGAAGCCAAGGTAGTGGGGACTAAGCAAGATCATGTGAGGAAGGTAGTGGTGAAGAAGAAGGTGGCATCGGTGACATCACAGAGCCTGACGGAGCTGGACGAGCTCAGACTGAGACTGGAGGGGGCAGAGGCGGGGCTTACTCAGCACATCCACATCTGTCTGGCAGAGGATGGAGCACACGACTGTGGCCTGAGGATCACACAGCTagagTCTGTACAGCGGGACGTGGACTCTATCCGTGAAGAGTACCTGCGTCTAAATGAGCGTGTTCTGAAGGAACTGGAGAACATGACTGACTCTGACAAAGCCACGTTCCTACACAGCCAACTCGGCCTCATCAACGAGAGACTGGGCAGTCTGGACAAGTGCTTCGCAGCATACCTACAgaggctGCGGGCTCTAAGGGTCCTCCTGCAAAGTGTGTCCAGGGCTGAGGACATCATTAAGGTCCATGAGGCCAGACTGACAGAGAAGGAGACCACATCCTTGAATCCTGCAGAGGTGGGGGACTACAGGTCCACTCTGAAGagtatgaGGGCGGAGCTGGAGGGGAAGAGTGCCGTCCTGGTCTCCATGGAGACGGAGCTGGGGAAGGCGGTCCACTGGAATGGCCAGGTGGGCAGAGCCTTCCACAGGTGTGACGTGGACCTGTCCATATACAGCGAACAGGTCAACCAGCTGTCTGACCGCTGGAGACGCATCCAGAGCCAGCTAGACTCTAGactgCGGGACCTGGAGGGGTACCTCCATCTGCTCCAGCAGTACACAACCACGAGCTCAGTCCTCAGTGAGTGGATTGGTGCTACTCGTCAGAAACATGACGCGCTGCAGGCCACCAAGATAGATAGCATCACAGCCCTGGACGAACACCTCAACCAGCAGAAGGTGCTGAACTCTGAGAtcaaggggaagagggagagtgtGGTGAGTGTTCTTGGAGACACTGACGCCTGCGTCAACTCCATCAAGGACTATGAGCTGGAGTTGGCCTCATACAGTGCTGGTCTGGAGACTCTACTAAACATCCCTATGAAGAGGACCATGCTACAATCTCCTTCTACTAAACTCACTGAGGAGACTACATTGCTGCAGACCCGTTACATCGAGCTGCTCACCCTGTCTGGTGACTACAACAAATACCTGGGAGAACTACACAATAACATGGAGACGCTCAAGATGCGTAACACCAGGATCGACCTGTTGGAGGAGGAGCTACGGCTGCTCAAAGAGGACATTGAGGACCACAACGCTAAGAACAGTTCTCTGGAGGAGGCGTTAGTCCGCTACCGGCTGGAGCTGTCCCAGTCGCAGGAGCAGCTCCTCTCTGTGGAGGAGGTGAAGAGGAGCACGGCCCTGCAGTGCAGCGCCACCCAGGACTCTCTTGCCTCCACCCGCGGCCAACTGAAGGAGCTGCAGGAGCAGGTGACCCGCCTCAACTCCCTCGtcgaggaggagaagaggaagaggaggatggcggATGAGCGCTACGGGGAGCAGCAGGATGAGCACGAGCAGGTGCTGAGGAGGAGGCAGAAGGAGTTGGAGCAGGCCAACTGGGCAAAGATGGAGGTGGAGAAGAGCGTGGGGACccaggagagggaggcagagcggTTAAGGAagcagctggaggaggaggggcagcGCTTCAAAGAGCTGGAGCAAGAGCTGTCTAAGGTAAGGAGACAATGCAGTGTGGAGATCAGTAACCTAAAGCTCAGCTATGAGTCCCAGATTACCATCTGCAGGACGGACATCCAGCACCTGTCTTCCcagagggaggaggtggaccAGGGCATCAAGTTGCAGTGTGACCGGCTAGAGGCTGATAGGAGGGACCAGGAGGACCAGCTCAAGAGGCTGAATGTGTCTCTGAGTCAGGCCGAGGAGCAGCGGAAGATGGCGGAGGAGGAGGCCCATTCTCAGAGATCTGTGGTCACAGAGGAGGCGCGGAGGAGAAGGGAGCTGGAGGCGCAGGTGGAGATATTAGTCaggcagagaggggaggacagtagTCAGTATAGAGATGAGGTGTCAGAGCTCACCAAGGCCCTGCAGGACAGTAGCGGCCAGCTGGTCCTCCTCACACACAGCCTGGacgaggagcagaggaggaggggagcattggaggaggagaggaccagGATGGAGCTGCTCCTGGGGGAGATTCAGGGCAAGCAGACCTCCTCCTCCCAGGGTGTGACCCGgctgagggaggtggaggaggagctgGTTAGTATCTGTACAGAGTTTAAGAAGGTGAGCGGTGAGAAGAacaaggcagagcagagtgtaGCCAGGTTACAGGGATGCATCAAGGAGCTGCAGGCTACTCTTGAAAGGAAAGATGGGGAGGTGGAGGCTTTGAGGAGAACCAGCCAGGAGGAGGTGATCAAGAGGAGGCACGTGGAGACAGAGCTCCAGAAAACTAACCACACCATGCGGGAGTACACCAGCACCATCACCATCCTGCGTCGCAGTCAGGAGGAGGCCAAAAccgtggggaggaggagagaagaggagcacaGGAAACTCCAGGAGGAGCTAGAGAGGAGGTTGAAGGAGTTCAAAGCCTCCACGGAGAGTCTGGCGTCTCTGAGCTCCGAGCTGAAGTCACTCCAACAGCATCTCCTCCAGGAGCAGGCCAAGGTCCGCGAGGCTAATCTCCGTAACGAAACACTCTACAAGACCATCGAGGAGAAGAGCCGAGTGCTCAACGAGAGCTCGGTAGAACACGAGCGTCTCCAGACCCTGACCCAGACCCTGACCAAAGAGCGACTGCGGCTCGAGGAGGAGTTGAGGGGGGTGAAACATGAGAGGGAGGAGCTGCTGAGGACCAGACAGGGGGCTGATGACGAGCTGGTGGCCCAGATCACTGTCCTGGAGCTGCAGCTGAAGAGCAGCTCGGGAAGCAGCCTGGATACCCAGAGCCTGGTGGCAGAGCTCTCTTCGGAGAGGGAGAAACTCAGGATGGAGATAGGGCAACTCCAGAGTCAGGTCTTTGAGACATCCTGTCTGATTCAGTCCACTGAGACCCAGTACAACgagatagggatggagagagatgctcTGCTGTTGAAGCTAAAGCAGACAAACCAGGACAGAGCTCGCTCTCAGAAGCTAGAGGAAGAGCTGAACCACATGAAAGTCTCTCTTGAGTCCGAGTCACGCATCAAGCTGTGCCTGCAGGAGGAGAACGAGAAGGTCAAGAAGGACTTCCTGTACTGGAAGGGCCAGTACGAGTCCAAGGAGGGCGAGGTGAGGCAGTTTAACTCAGAGAAGGAGAAGCTGGAGCGGGAGAGGAGCTCTCTGAAGACTGAGATAGAGCGGTTGATGAGAGAGCTGAGGGAGGTGGAGGAACGTTATAAGAGCAGGCTGCTGATCACCCAGACCCAGTTCTCTGAACTCACCTCCGCCAGAGACTCCCTGGAGGCAGAGTTGAGTAAACTCAGGGAGCGGCCCTACGCCTTCGCCAAACACACCCAGACGGACGAGAGCGGAAAGAAAGACCTGGACCCCGCCACGCTGGTCTTCGATGGTGTCCGCAAAATGGTGACGGCCAAGCAGCTGCTGGACTGTGGGGTCATCAACAAAGTGACTTACGGACAGCTCCTGAACGGTCAGAAGACCGTCAGCGAGGTGTCTGTGGACATCAAACTCAATCTTAAGGGGACTGGTAGTATCTCTGGTGTGGCTGTGGGACCTCAAGGTAAAATGTCCCTCACAGAGGCCAAGAGAGAGAACATCCTCTCTGAAGACAGCACCATCTTGCTACTAGAGGCCCAAGCTGCCACAGGCCACATTGTGGATCCCAGAGCCAACGAGAAGATGACGGTGCAGGAGGCGTGCAAGAGAGGAGTGGTATacgaggaggacagagagaggctgctgATTGCTGAGGCTGCATGTCTGGGGTACCGTGACCCCAACACCACCAAGCTCTTGTCAGCAGGCCAGGCTATGAGGAAGGGCCTGATCGATAGAGTCACAGCTCTGCGGATGCTCCAGGCACAAGAATCAGTAGGGGGAATCATAGACCCTGTCCTCAGTGTCTTCCTCCCTAAAGATGCAGCCATGGACCGGGACCTGATCGACGAGGATCTGTACCGAGCCTTGAACCAACGACCTGAGTGTTACTTGGACCCAGACACCCAGCTGGGAACCAGCTACGTAACCCTGAAGAGGAGATGCAAGGCCGAACCCACCACAGGTCTCCTGATCCTCCCCGCTCCAGAGAAGCCCATGACAGTGAATGGTCTCAGGGGAGAGGTGTCTGTCACAGACCTGATGAGTGCTAACCTCTTGGAGAAATCTGACATGGACCAACTGAAGGAAGGCAAACTGACCAGCCAGGACATCGAGCACCGGTTGAGGTCGTACCTCCGTGGCTCCACCTGTATTGCGGGGGTCTACAACGAGGCAAACGACAAGACCTTGTCCATCTACCAGGCCATGAAGGAAGGGTTACTGAAGCCCAGCACCACCCTGGAGCTCCTCGAAGCCCAGGCCGCCTCTGGATTCATGATTGACCCCGTCAACAACCTCTGTCTGACCGTGGTCGATGCCTACAAGAGGGGCCTGGCTGGGCCGGAGTTCAAAGACAAACTGTTGTCTGCAGAGAGGGCCGTCACCGGGTATAAAGACCCAGGCACGGACAAGATCATCTCCCTGTTCCAGGCCATAGAGAAGGGGCTGATCGAGAAGGGACATGGGATCCATCTACTCGAGGCTCAGATTGCCAGCGGGGGCATCATCGACCCCAGACACAGCCACCGCATCGAGGTGGTGACTGCCTATAAGAAGGGCTACTTCAGCAAGGAAATGAACCAGATCCTGACAGACGAAGGGGACAACTCCAAGGGCTTCTTCGATCCAAACAACCAGGACAACCTAACTTATCTCCAGCTAAAGAAACGCTGCATCATAGACCAGAAGACTGGcctggttctcctctccatcaaGAAGAAGAAGGAACCGCCTCAGCCTATCACCCAGAAGAGCACTCTAAGGAAGAGGAGGGTGGTGATTGTAGACCCAGACACCAATAAGGATATGTCGGTGAAGGAAGCGTACGACAAGGGGCTGATCGACCACGAGATGTTCCTGGAGCTGTCGCAGCAAGAGTGTGAGTGGGAGGAAATCACTATCACCACTCAGGATGGATCCAAGAGATTGGTCATCTTCGACAGAAAGACGGAGATCCAGTATGACATCAGAGAGCTGCTGGAGAAGAGTGTGATCAACCAATCATTGTACGACCAGTACAGATCGCAGATGATTACTCTCACACAGTTTGCTGACATCATCACCAGCAAGACCAAAGCAAACAGATCCGCTGCCTCgtcttcctcctcatcatcaacatcatcatccaaaGCCAGAGCAGCAGCAACATCAGCAGCAGCATACTCATCAAGCACCTACTCACCACGGATCACTTCAACATCATCTACTTCCATCAAGGCTGAGAAGACGAGCTCCATCATTGGCAGCTCTGCCATTGGACCCTCCTCCATTGGCGACTGCTCCACCATCACCAGATCCACCACCAGCAGCTCCTTTACCCAGCCTGATGGCCCTTCCTCTCCCAGCACTCTGAAGCATATCGccagtatctctgtctccctggCTTGCCCTGCTGAAGCTGTGGTCTTGGATGGGGAGCAGAGCCCCGTGGGCGCCATCTTTGACATGGAGGCCCTAGAGAAGATCTCCATCTCTGAGGCTCACAAACGTGGGCTGGTGGACAGCATTTCTGCCCAGAGACTACTGGAGGCCCAGGCTTGCACCGGAGGCATTGTAAACCCTTCCGATGGACGGCGCCTGTCCATCCAGGAGGCCACCAGCCAGGGGATCATCGAGAACGACATGGCTACCAGGCTGAAGCCCGCCCAGAAGGCCTACATCGGGTTTGAAGACATCAAGTGCAAACATAAAATGTCCGCTGCTGAGGCCATGAGGGAGAAGTGGCTTCCCTATGAGGCGGGCCACCGCTTCCTGGAGTTCCAGTTTGTTACTGGAGGCCTGTATGACCCAGAGCTGGGCCGCAGGAGAACCATCAAGGAAGCTCTCAAAGAGGGCTGGCTGGATGGAAGAGGGGCCCAGAAGCTCCAGGACACGAGGCACCATGCCAAGAACCTGACCTGCCCCAAGACCAAGCTGAAGATCTCTTACAAAGAAGCAATGGATAACTGCTTGGTAGAGGAGAATACAGGAGTCAAGATGCTCCAGGCTGCATCTGCCTCCTCCAGAGGGATCAGTAGTCCGTACAACTCATCCACTCCCGGGTCCACATCGGGCTCCAGGACCGGGTCGAGGGCGAGCTCTCGGAGAGGCAGCTTGGACCTGGGATCATCTGGCTCCTCCAGACGATACAGCATCGTCAGCAGCACCACCTACAGCCGCACCTCCTTCAGTTCCAGCTCCATGTCATAGGGTGATGGAGAAGAGGGAAAAATAGGGATAACTATTAATTAGTTACATTAACTTAGTCTTTGTCTTAACCTCTGCATACTTTTagttttttgttttacatattaCCTTTTGCTTTACTTATGTAAGGAAGCCCTGCTTATTGGTCAGTTAGAAATGTGTCTGTCCTAAATAAAGAGGTCCCATCAAATGTTGTATCTTCTGTTTAAAGTGGCTGCAGACTGATAACAATGAAACAAACATTCCTGGGTGTTTGAATGGAAGAAAAATACTTCATGTAAattgtatttgttctctctgaCATCATGATACGAGCACTTTGCTGCCACATAATATTTTTTCAAAACTGTTGTACTACAGTATAAATGTATCATTTTGATGACAATAATGTAACAaatttacaaatgtataaaaagttGGATGGGAGAGGGTTAGTGTCTTATGTGTGTTTCGGGGAACATTCATAGGTGTAAGGTACAGTACTGTTTCGTGCATGGGATGTGAGAAGGTGTCATAATAACATTGCTTAGTGTTTATACTGTTAGTGTAATATGGGGCTGTCTTCTTTTAACACAATGTAACTATTTTTCTATTTCTCAAAATAAAATGTTACATCCTT

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU2548544 lncRNA upstream 51191 35530869 ~ 35531082 (+) True G2228785
TU2548541 lncRNA upstream 56578 35525483 ~ 35525695 (+) True G2228782
TU2548402 lncRNA upstream 105517 35473033 ~ 35476756 (+) True G2228660
TU2548376 lncRNA upstream 213801 35368122 ~ 35368472 (+) True G2228636
TU2548375 lncRNA upstream 214955 35366982 ~ 35367318 (+) True G2228635
TU2548573 lncRNA downstream 16698 35634957 ~ 35635306 (+) True G2228814
TU2548571 lncRNA downstream 17304 35635563 ~ 35637191 (+) True G2228812
TU2548592 lncRNA downstream 19764 35638023 ~ 35638479 (+) True G2228833
TU2548593 lncRNA downstream 23183 35641442 ~ 35643876 (+) True G2228834
TU2548694 lncRNA downstream 161218 35779477 ~ 35779757 (+) True G2228932
XM_021599609.2 mRNA upstream 36838 35543507 ~ 35545435 (+) True psmg4
XM_036969306.1 mRNA upstream 89898 35405569 ~ 35492375 (+) False LOC110521760
XM_036969191.1 mRNA downstream 1660 35619919 ~ 35634039 (+) True tbc1d7
XM_036968987.1 mRNA downstream 105637 35723896 ~ 35734960 (+) False LOC110521768
XM_036968986.1 mRNA downstream 105775 35724034 ~ 35734960 (+) False LOC110521768
XM_036969076.1 mRNA downstream 182384 35800643 ~ 35805071 (+) False LOC110521770
XM_036969226.1 mRNA downstream 385050 36003309 ~ 36062700 (+) True LOC110520994
TU2548536 other upstream 63031 35518234 ~ 35519242 (+) True G2228777
TU2548066 other upstream 392122 35181969 ~ 35190151 (+) False LOC110521757
TU2545552 other upstream 1977379 33572140 ~ 33604894 (+) True G2225948
TU2542282 other upstream 4715751 30863824 ~ 30866522 (+) True LOC110521703
TU2539452 other upstream 6560391 29021586 ~ 29021882 (+) True G2220253
TU2548634 other downstream 75051 35693310 ~ 35735400 (+) True LOC110521768
TU2548707 other downstream 182773 35801032 ~ 35802968 (+) True LOC110521770
TU2550824 other downstream 1966767 37585026 ~ 37587002 (+) True insl5a
TU2551325 other downstream 2705101 38323360 ~ 38336981 (+) True G2231371
TU2552745 other downstream 3172056 38790315 ~ 38790675 (+) True G2232661

Expression Profile


XM_036968811.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
End of interactive chart.

XM_036968811.1 Expression in each Bioproject

Bar chart with 20 bars.
XM_036968811.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.