RNA id: XM_021599614.2


Basic Information

Item Value
RNA id XM_021599614.2
length 3249
RNA type mRNA
GC content 0.48
exon number 13
gene id phactr1
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 35642397 ~ 35717855 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATCGCCCGCATCACCTACCTACACGGTCTGCCCGTGCATGAGTCTCGTCTCGCGCAGTTCAGTTGGTCGCTAGTGGAAGGACGTTGCCCGGCCAAGGATACCTAAATGGCGGCGTCAACGGAGAATGAGATAGACCGTCGGCCGATCCGGAGAGTCCGGTCCAAGAGCGATACGCCCTACATCACTGAGTcgcgtctctctctccacctggagACAGtTGAGGAGGTGGAGCGAATAGCGGCGATGCGATCTGATTCGCTGGTCCCtggcacacacacccctcccattCGGAGGCGGAGCAAGTTTGCCACCCTAGGGCGTCTCTTCAAGCCGTGGaaatggaggaagaagaagagcgaGAAGTTCAAGCAGACATCTTCTGTCCTGGAGAGGAAGATGTCGACCCGGCAGAGCAGAGAGGATCTGATCAAGAGAGGAGTGATGAAGGACATCTATGACAAAGacggGGCGGTAgtaatgagaggagaggaggagaagatggagaacGGGAGGTCTCCAGCATTAGGAGGGTCTGATCCATCACCATGTGATGGAGCTGAGCTGATGGATGGAGCAGGGTCAGCCATAGGTACAGTTGAGTTCCAGATGTCTGGAGAGGGGGCGTGTCCACAAGACCACACCCAGAATCCCAGCCAGCCTCCACCCACTAAGAAGGTTATGGTGTATCCAGGCGAAGGGGCTGGGGCAGAGTCATCACATCACACCATAAAACATAAAAAACAACCCCCAGTGCTACCCCCCAAACCGTTCAACAGGCTGCCCAACCACATCACAGacgGTATGCCAGTGAAGCTGCCCTGTATGTCCATGAAGCTGTCGCCTCCTCTACCTCCTAAGAAGCTGATGATCTGTGTGCCTGTGGGTGCGGGGGGGAGCATGGAGCCCTCGGCCCTCACCTTTCAGAagtgcccccctccctcccaccacgtGGGGTCCCTGGGGGGCCACTCCCTACATTACGGGACCCTCCCTGTGCCCCTACACCCCCCCAGCCGCATCATCGAGGAACTCAACAAGACCCTGGCCCTCACTATGCAGCGATACAAGAGCTCGCTGCACCACGCGGTTCCCGCGGTGATGATAGCATGTGACTACAACAAAGAGAACCTCCCCAATGAGGAAGACTATCAAGAACTACCTGGTTCGTACAGGGATGaggatgatgaagaagaagatgacgatgatgatgatgatgatgatgatgatgaagaagaggaggaagatgatgaaGATGAAACACTCTTTACAAgTACCCTGGCTCTGAAGGTGTTGAGGAAGGACTCCCTGGCCATTAAGATCAGTAACCGTCCGTcacagagagagctggaggaTAAGAACATACTGCCCACACAGTCAGACCAGGAGAAACTGGAGTTCAGGCAGCAGATAGGCACCAAGCTCACACGGAGGTTGAGTCAACGGCCAACTACAGAAGAGCTGGAACAGAGAAACATACTCAAACGCCACAATGagctggaggagcaggaggagatgagggagctCAAGAAACGCCTGTCGAGaaagTTGAGTCAGAGGCCCACGGTGGAGGAGTTGAGGGAAGCTAAGATCCTGACCCGCTTCAGTGACTACGTAGAGGTTGCTGACGCTCAGGACTACGACAGGAGGGCAGACAAACCCTGGACACGACTCACAGCTGCTGATAAGGCTGCCATACGTAAAGAACTCAATGAATTTAAAAACACAGAGATGGAAGTGCATGAGGGTAGTCGCCATCTTAccaggtttCATCGACCGTAGTTCTTCTTCTGCCATCTTTTACAATAACCTCAAGTGCTGGATCGCAAACTACTGCCTCTGTGTACCACACCCCTTCGCTTCCAGACCAGAACACAACAAGACCAGAACTGGTCCAGAACCACACTAGAACCAGAGTAGAACATGTACTGAAACTGACCAGAAATGTAATCTGAAcctgggaggggtgtgtgtacAGAACTGGGCAGCTGACACTACTCCAGGCTCCAGTGTTGACCCAAAATATGTGCCAATATCTAGAGAGGGCAGACTGGACCaatcacaacagtatcttggttCTGTGTTTATAGAGAGGTCACAGTGTGGCCACGTCGGGGTTGTGGAGAGGGAGCATCGTACACATGGAGAGAGATTGATGGAAAGCACtggatggactgactgactgggttctCCTCTAAACGGAGATTATATGGACTAAAACGTATTGTTTTTAACAGCCTTTTATTATCCTTTTTAATTATGAAGATAGTTCATGTGTTTACTTTACTGCACTTTAGTTTTTGACGGTACTCTACGGAGGGGTTATGGAACTCTATTCCTATATCTGTGCCAACAAGACTTTGGGATTGTGGGAAATTGAGTTTGGGAGGGTATCTGTAAGGAATACAGAGAGACATCCAACAACTGATTGGTTAAAAAATTATTATCCTCCATTGGTTAATGTTCCTGCCTTTTTAATACTTTTTGGTACATTATTAGTTTGACTATTTTCCATTGTGGGCTGCTGTTTCCAAAACAGAGGGACCAAACCCTTTTAATCTGATAGTACTGCAGAATAGGATTCTGTAATAAGTGTGTTGTGGTTAAAGTACTATTTTACAATACCGTACACGGTATGTGCTATTCTGAAGGAAACTGTAGTAGGAGAATATGATCGGAATATTTACCTCTAAAAACGTTGAAATACAACACAAAACTCTCCTGTCCATGTTGTGTTCATGTTGGGATAGTGAAATGTGAACCAAGCAATAATTGAACTTTTCTttcctccatctgtctgtctttctgggcTGCGTTCAAGTGAACAAGTACTGGGAACATTTCAGAGAGCTACCCGCTCAATACCAAATACACTTTGAAATGCTGTTGTGATCTTGAATGCAACCCAGATCATCATTATTACTGTTGAgagttctgcaaccctctgtatAGTGTCACTGTGCCTGTTGTATTGTTTACAGGGATGAAAACATTGCCAAATGTACTTTGTTTGAATGACATTTGATCAAGTATGTTGTCAATATAATGTTTCAGTAGCGTGCTCCATAGACTGGTAAGTATCAGTtctgaatggaatggaattgtTCAATTTCTCAATGTTCTCAAAACAGGAATTGTATGGTTCCACCTGGTTTGGCCTCATAGTGGAGAACCTATATTAGACCACCCTTTGGCTGTGAATGAAAGTACAGTACCACCTTTTGCTCACAAGAAGCCAGACACCTCAAAA

Function

GO: NA

KEGG:

id description
K17594 PHACTR; phosphatase and actin regulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2548835 lncRNA downstream 4784 35636594 ~ 35637613 (-) True G2229064
TU2548837 lncRNA downstream 7065 35634954 ~ 35635332 (-) True G2229066
TU2548838 lncRNA downstream 7854 35634160 ~ 35634543 (-) True G2229067
TU2548836 lncRNA downstream 8628 35631437 ~ 35633769 (-) True G2229065
TU2548823 lncRNA downstream 28220 35613941 ~ 35614177 (-) True G2229052
TU2548941 lncRNA upstream 62144 35779999 ~ 35780405 (-) True G2229165
TU2548945 lncRNA upstream 68680 35786535 ~ 35786979 (-) True G2229169
TU2548952 lncRNA upstream 82261 35800116 ~ 35800471 (-) True G2229176
TU2548959 lncRNA upstream 88242 35806097 ~ 35806520 (-) False G2229179
TU2548963 lncRNA upstream 88242 35806097 ~ 35806585 (-) False G2229179
XM_036968865.1 mRNA downstream 65350 35545576 ~ 35577047 (-) False LOC110520993
XM_036968866.1 mRNA downstream 65350 35545576 ~ 35577047 (-) True LOC110520993
XM_021599605.2 mRNA downstream 128005 35499988 ~ 35514392 (-) False LOC110521763
XM_021599618.2 mRNA upstream 92713 35810568 ~ 35873392 (-) True LOC110521771
XM_036968976.1 mRNA upstream 182620 35900475 ~ 35966931 (-) False LOC110521773
XM_036968974.1 mRNA upstream 182620 35900475 ~ 35966970 (-) False LOC110521773
XM_036968977.1 mRNA upstream 182620 35900475 ~ 35966970 (-) False LOC110521773
XR_005040913.1 mRNA upstream 201056 35918911 ~ 35920667 (-) True LOC118945798
TU2547499 other downstream 1099778 34542217 ~ 34542619 (-) True G2227801
TU2547162 other downstream 1318742 34311142 ~ 34323655 (-) True G2227478
TU2546396 other downstream 1832503 33809379 ~ 33809894 (-) True G2226745
TU2546202 other downstream 1939954 33699880 ~ 33702443 (-) True LOC110521741
TU2546157 other downstream 2012503 33629122 ~ 33629894 (-) True G2226519
TU2548951 other upstream 80949 35798804 ~ 35799357 (-) True G2229175
TU2549451 other upstream 495291 36213146 ~ 36214385 (-) True G2229647
TU2550007 other upstream 802497 36520352 ~ 36524797 (-) True LOC110521777
TU2551806 other upstream 1783355 37501210 ~ 37523006 (-) False LOC110521791
TU2551810 other upstream 1783556 37501411 ~ 37523006 (-) True LOC110521791

Expression Profile