RNA id: XM_036969226.1


Basic Information

Item Value
RNA id XM_036969226.1
length 2629
RNA type mRNA
GC content 0.52
exon number 16
gene id LOC110520994
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 36003309 ~ 36062700 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCGCAAGTTTTTTCTCTTCAAGGGTTTGGTGAGTAGAGGTGAACGATCTTGCGGAACAGATAGTAGTTGTTTTGCTCTGGTTATTTTTCTCACTACCCATCCACCGCAAGAGACCTTGGCCTGTGGACATTTGTAATTACAAAAGTATTGGTTCAACAAGTTGCCTACTAGCGTCCTGGCTTGATGAGGATGGCAGAAGAACCTGCGACAAGAGAGCCGGAGATGTCTGACGCTGGCTCGGACGAAGAGCTGGAGCTTCCCGCACCGATGATGGAGCAGGGGAGTCACGACGGGAGTATCAGAAAGggTTGTGATCCTTGTTCCCAGACCCAACGCAGTAAGCTGCAGCACCGTAGAGCTCGTATCAACCAGCAGATAAACAAGGAGATGAGGATGAGGGCCGGGGCTGAAAACCTCTTCAGAGCCACCACTAACAACAAAGTGAAGGAGACTGTGGCTCTAGAGCTGAGCTTTGTCAACTCCAACCTGCAGCTACTGAAGGAAGAACTAGAGGAGCTCAACAGCAGTATGGAGGTCTATCAGACagagagtgaAGCCATCAATGTTCCCATGATCCCACTGGGTCTGAAGGAGACCAAGGAAGTAGACCTCACTGTTCCTCTCAAGGAATATATCTGTGAGCACTACAGGGAGGACAGCTCTCTGTTTGAGAAAGAAATCAAGGAGTTTATGGAGCTCAGACAGGCCATGCGTACCCCCAGTCGTAACGAGGCAGGTTTGGAGCTCCTGGTAGAGTATTATAACCAGCTGTACTATCTGGACCAGAGGTTCTTCCCCCCACACAGAACACTAGGAGTCCACTTCCACTGGTATGACTCTCTGACAGGTGTGCCGTCATGCCAGCGTGCGTTGGCATTTGAGAAGGGAAGTGTGCTGTTCAATGTGGGAGCTCTCTACACACAGATAGGAGCCAGACAGGACCGCTCTGCTGCAGCTGGCATAGACAGGGCTATAAACGCTTTCCAGAGAGCTGCAGGTGCATTTAACTTCCTGAAGGAGAACTTTTCCAACGCTCCCAGTCTGGATATGAGCGGCCCGTCGCTATGCATGCTGGTCCGGCTGATGATCGCCCAAGTGCAGGAGTGTGTGTTCGAAAGGGTCACACTCACCACGCAGGACACACACTTCACCTCCCAGCTACAAGTGGCTCAAGAGGCTGCACGAgTATCAGATGTGTATAGCTTGGTGCTCCAGACCATGTCTCAGCCCTTAGTGAAGGACTATGTCCCATTCTCCTGGGCCTCCATGGTTCAGGTGAAAGCAGAACACTTCAGAGCTCTCTCACACTACTATGCTGCTGTCGCTCTCTGTGACCGCACACAGTCCATTGATGAAGAAGATtgtgatgaagagggagagaaggctcTCCTCCAGCTCCATGTCAGTAATCCTGCTGGACCCCCACTCAGCCAGGTGCTCAGAGACCCCGAGGAGAGACGCAAACTGGGTAAGGCCCACCTGCGTCGTGCGTTGATCAGACATGAGGAAGCTATGAGAGTACATGGTCTATGTAAGATCTTAAGGAAGATGGATATTCTACAGGAGGTGCTCTCCTTCGTGCACAAACGCTCTTTGGACAAATACTCTGAGATGGACCGAGAGGACGACTTCGACGAGACAGCAGAGGCTCCCGAGATACACTctCAAACCCAGCAGAAGCCTGATATAATTCCACCCAATTTCTCCACAGTCCAAGTCACTGACATCTTCCGAAGGCTGGGTCCCTTGTCAGTGTTCTGTGCCCGGGCGCGCTGGGGGCCGGTGCGTTTGGTGTGTCTCCAGCGAGGGGAGGGGGGTCTGGGGCTAACTCTCAGAGGAGACTCTCCTGTTCTGGTGGCTGGAGTAGTGCCGGGGGGTTGTGCTGAGgagGCAGGTCTGAGAGAGGGGGACTACATAGTGGCGGTGGATGGAGAGAACTGTAAGTGGGCTAAACATGGAGAAGTGGTCCACAGCCTGAAGAGCTGCAGTGACCGAGGAGTGGAGCTCAGCGtcatcacactgcacacacacgacacacaggtGGAGAGGAGGTCAGTGATGCTCTCCCCCAGAGGAGACAAAGAGAACGCTTGCCAACGGCccatgggtggggctaaggcccAGAGCTCCGTCTCCTTACTCAACTGGAACAGGAAGAAAAACAGGGAAGGGGGAGGAGTCACCAAGAGACTGGGCAGCACCTTCAGTCTACCATTTGGAAACCTGGGAGACGGTGAATCCATGTACTGAGATAGATGGAGGGCAAGCTGAAATGGTGCTTGATTCCATACAGTGCACTTCcagccaaaagtagtgcactagggagtagggtgccatttcagactgtGCTATAGACCGACAAACCACTCAGGGAATGGCAAAGGGATATGTTCCAATACAAGGATGAGTTGTATATGACTGGATACTCCTAGATATTGTAATGCATTATTGCAGCAATTGCAAGGAACATTCCGAATAGGAGAATTGTACGAAGAGAAGAGGGATGCTATGTCCAGATGCCCAGGGAAACTACAGTGGTTTTAGAAAGCACCCAactgcaggtacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2549174 lncRNA upstream 14332 35988738 ~ 35988977 (+) True G2229381
TU2549148 lncRNA upstream 32054 35971036 ~ 35971255 (+) True G2229355
TU2549062 lncRNA upstream 90535 35912548 ~ 35912774 (+) True G2229270
TU2549060 lncRNA upstream 92686 35910105 ~ 35910623 (+) True G2229268
TU2549054 lncRNA upstream 100530 35900498 ~ 35902779 (+) True G2229262
TU2549191 lncRNA downstream 1530 36064230 ~ 36067189 (+) True G2229398
TU2549363 lncRNA downstream 92986 36155686 ~ 36156108 (+) True G2229561
TU2549366 lncRNA downstream 95942 36158642 ~ 36158907 (+) True G2229564
TU2549798 lncRNA downstream 457647 36520347 ~ 36523684 (+) False G2229959
TU2549802 lncRNA downstream 457647 36520347 ~ 36523684 (+) True G2229959
XM_036969076.1 mRNA upstream 198238 35800643 ~ 35805071 (+) False LOC110521770
XM_036968987.1 mRNA upstream 268349 35723896 ~ 35734960 (+) False LOC110521768
XM_036968986.1 mRNA upstream 268349 35724034 ~ 35734960 (+) False LOC110521768
XM_036969191.1 mRNA upstream 369270 35619919 ~ 35634039 (+) True tbc1d7
XM_036968811.1 mRNA upstream 385050 35582273 ~ 35618259 (+) False wu:fi04e12
XM_036968941.1 mRNA downstream 375912 36438612 ~ 36489124 (+) True LOC110520956
XM_021599626.2 mRNA downstream 440451 36503151 ~ 36517233 (+) True LOC110521776
XM_036969040.1 mRNA downstream 452102 36514802 ~ 36516539 (+) False LOC118945799
XM_036969041.1 mRNA downstream 452102 36514802 ~ 36516539 (+) True LOC118945799
XM_036968902.1 mRNA downstream 613457 36676157 ~ 36685931 (+) False LOC110521781
TU2548707 other upstream 200341 35801032 ~ 35802968 (+) True LOC110521770
TU2548634 other upstream 267909 35693310 ~ 35735400 (+) True LOC110521768
TU2548536 other upstream 484067 35518234 ~ 35519242 (+) True G2228777
TU2548066 other upstream 813158 35181969 ~ 35190151 (+) False LOC110521757
TU2545552 other upstream 2398415 33572140 ~ 33604894 (+) True G2225948
TU2550824 other downstream 1522326 37585026 ~ 37587002 (+) True insl5a
TU2551325 other downstream 2260660 38323360 ~ 38336981 (+) True G2231371
TU2552745 other downstream 2727615 38790315 ~ 38790675 (+) True G2232661
TU2552955 other downstream 2749950 38812650 ~ 38813379 (+) True G2232855
TU2553172 other downstream 3111946 39174646 ~ 39176693 (+) True LOC110521001

Expression Profile