RNA id: XM_021599626.2


Basic Information

Item Value
RNA id XM_021599626.2
length 2216
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC110521776
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 36503151 ~ 36517233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTATCGGAGTAGCACACACCCAGTCCCAAGTATGAACGCACACAACAGTGGTTATTATGACATTACTTTGGAAGCAGAGAGATAGGGAGCAGGTTACAGAGAAATCACTGGCACGTCATTCCTCTGTTTAGTTTCTGTGTGCTTTTTTTTGAGTCAGTTACACTTGTAGTGAGATGAGCAAATTACTTCATTCTTCTGTTTTGGAATGGTTGGACATAAATACTTTTTTGATTTTCCTCTGTGTTTTCTTGGTACTTGCCGACCTCCTGAAAAACAAAACTCCGAAGAATTTTCCTCCTGGACCTTGGTCATGGCCTTTCATTGGCAACATGTTTCAATTTGATCCTGCTAAGATGCATCTTCAGTTTGAAGAGTGTGAAAAAAAATATGGAAAGATTTTCAGCCTTCGAATTCCATCAGCAAACCAAGGGTCAAAGTGGGTTATTCTGAGTGGATACGAGATGGTGAAAGAGGCCTTGGTCCACAATGGCGACAGTTTTGTCGATCGTCCCTCCATTCCCTTATTTGAAGATATATATATTGGAAGTCAAGCAATGGGAAGTAAAGgtgtgGTTATGTCGAACGGGTATCCATGGAAGCAACAGAGGAGGTTTGCTCTCTCTACACTGAGGAACTTTGGACTGGGCAAGAAGAGTCTGGAGCCATCCATCCAGATTGAAGCGCAGTGTTTGAATGAAGCCATTCAGAGTGAACAAGGAAAACCCTTCAGCCCCCAGATACTGATGAACAATGCTGTTTCCAATGTGATCTGCTGTCTTGTGTTTGGTGCCCGCTTTGAATACAGCGATGACCAATTCCAAACCCTCCTGAAAACAATGAACGAGATTATTTACTTGGAAGGGGGCTTTTGGGCCGGGATGTATAACATGATGCCGTGGGTCATGCGTCGGGTTCCTGGTCCTCACAGAAGGATCTTCACTGGCTGGAAGGAGGTCATCTCCTTCATCAACATCAGGATTCAGGAGCACATGAAGGACAATGACCCCTCGTCCCCAAGAGACTTCATCGACTGCTTCCTCAACGAGATAGAGAAGTGTGAAGATGACACAAGGGCTGGGTTCAACTTGGAGAACTTGTCCTTCTGCACTCTGGATCTATTTGTGGCTGGGACAGagaccacctctaccaccctctatTGGGGCCTTCTGTTTATGATCAACTACCCGGAGATACAAGCCAAGGTGCAGGCAGAGATCGATGCAGTTGTTAGGTCGTCGCGGCAGCCCTCCATGGAAGACAGGAACCGCATGCCCTACACAGACGCAGTCATCCATGAGACACAGAGGATGGGGAATATCATACCGCTCAACGTGTCCCGCATGGCCACTAAAGACACTGAGGTTGGAGGATACACCATCCCTAAGaACACCATTGTGCTTGGCACCCTCCAGTCGATCCTGTTTGATGAGTCAGAGTGGGAGACCCCTCACACCTTCAACCCGGGACACTTCCTGGATCAGGAGGGCAAGTTCAGGAAGAGAGACGCATTCCTTCCATTCTCTTTGGGTAAGAGGGTGTGTCCTGGGGAGCAGCTAGCCAAGATGGAACTCTTCCTGTTCTTCACCTCCCTGCTGCAGAGGTtcaccttcttctctcccccaggGGTGGAACCCAGCCTGGACTTTCAGATGGGGTTTACACACAGTCCCAAGCCTTACCAGCTGTGTGCAACACCTCGATGAGTCTTCCACAGCTGCCCTATTCATTATGTTGCTGGGGTTTAAAAATTAATTATTGGAGGGCCAAGTGTCTGAAGGTTCAcacctcccttgtacttgattgatcaaCTAAGGTAATTGATTAAAACTTCCTTTGCCTGGTTGCTTaggttttaaattgacacaaatGAAAAGGAAATGAAGTCTTTCTTAACACCAAACAACTGAAAAGGCTGCAGATGGAGAAAACACACTCACGTAGTGACACTACACATACCAATAATACTCTACATATCAAGATCTCAAACCATATGTTGTAGTCCTAGATTAAACTTGAATAAGAAGGACATATTTGATTGAAAATCTAAAACACTCCTACATTATCAATGTAAATGTACATAATTTACAATGTAAACATACTACATGTCTTTCATGTATATGGCATATCTGAATGTATTTGACCCATGGTCTGGTGGATTGTGATTTCTTCTGTACCTTTTTATTTTCTATCAAGGCAATATACACTACAATATACA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07418 CYP2J; cytochrome P450 family 2 subfamily J

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2549366 lncRNA upstream 344244 36158642 ~ 36158907 (+) True G2229564
TU2549363 lncRNA upstream 347043 36155686 ~ 36156108 (+) True G2229561
TU2549191 lncRNA upstream 435962 36064230 ~ 36067189 (+) True G2229398
TU2549174 lncRNA upstream 514174 35988738 ~ 35988977 (+) True G2229381
TU2549148 lncRNA upstream 531896 35971036 ~ 35971255 (+) True G2229355
TU2549798 lncRNA downstream 3114 36520347 ~ 36523684 (+) False G2229959
TU2549802 lncRNA downstream 3114 36520347 ~ 36523684 (+) True G2229959
TU2549885 lncRNA downstream 109782 36627015 ~ 36627235 (+) True G2230040
TU2549865 lncRNA downstream 127357 36644590 ~ 36647937 (+) True G2230020
TU2550154 lncRNA downstream 230191 36747424 ~ 36747831 (+) True G2230283
XM_036968941.1 mRNA upstream 14027 36438612 ~ 36489124 (+) True LOC110520956
XM_036969226.1 mRNA upstream 440451 36003309 ~ 36062700 (+) True LOC110520994
XM_036969076.1 mRNA upstream 698080 35800643 ~ 35805071 (+) False LOC110521770
XM_036968987.1 mRNA upstream 768191 35723896 ~ 35734960 (+) False LOC110521768
XM_036968986.1 mRNA upstream 768191 35724034 ~ 35734960 (+) False LOC110521768
XM_036968902.1 mRNA downstream 158924 36676157 ~ 36685931 (+) False LOC110521781
XM_021599636.2 mRNA downstream 159157 36676390 ~ 36685931 (+) True LOC110521781
XR_005040896.1 mRNA downstream 174183 36691416 ~ 36705488 (+) False LOC110521782
XM_021599639.2 mRNA downstream 174183 36691416 ~ 36705489 (+) False LOC110521782
XM_021599641.2 mRNA downstream 174184 36691417 ~ 36705489 (+) False LOC110521782
TU2548707 other upstream 700183 35801032 ~ 35802968 (+) True LOC110521770
TU2548634 other upstream 767751 35693310 ~ 35735400 (+) True LOC110521768
TU2548536 other upstream 983909 35518234 ~ 35519242 (+) True G2228777
TU2548066 other upstream 1313000 35181969 ~ 35190151 (+) False LOC110521757
TU2545552 other upstream 2898257 33572140 ~ 33604894 (+) True G2225948
TU2550824 other downstream 1067793 37585026 ~ 37587002 (+) True insl5a
TU2551325 other downstream 1806127 38323360 ~ 38336981 (+) True G2231371
TU2552745 other downstream 2273082 38790315 ~ 38790675 (+) True G2232661
TU2552955 other downstream 2295417 38812650 ~ 38813379 (+) True G2232855
TU2553172 other downstream 2657413 39174646 ~ 39176693 (+) True LOC110521001

Expression Profile