RNA id: XM_021599630.2


Basic Information

Item Value
RNA id XM_021599630.2
length 4546
RNA type mRNA
GC content 0.54
exon number 28
gene id LOC110521777
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 36520352 ~ 36541228 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTAAATATATTTagatagtggagtagggtggtgttttatttttttagtgAGTGTAATGTTAAATGGTAGGGTATTGTTTTTTAAGCAAAGAATAAGGGagttatactccagtctagtaggaggcggtaatgcaacatttattgaaTGAAAACCGCCGTTAAACCTCATGGAAGAAGACAAAGTGTAGAGGGATTAACATGGCGTCTATGGTTGCTGTGTTGATCGGGGCCGTGGATGAGAAAAACAATATACTGAACAGGAAGATAAATACGGTCTAGGTCAATTTTCAGCTAAAAACCTGCATATTACAGTTTTCGTTGGACTAGCTGCCTCACTAGACCCTGATCACTCAATACAGAGTAGCAGTTAGTGGGAGAGGACAGGATCGAGGCATGGAGGAATCAAAAAGCCCATTAAAATCAGTCAAGTCCTCTCGCAACGAGGCCAAGGGAGCCAAAGCTTCATCCTCTGCCAGCTCCAGGCCCCTGAAAGAGGCTCCAGTCCAGAGAGAGTGCCCCAAGCCTGCCACTGCCTGTCGGAGCAAGGAGAACATCAccacagccagggaagaccataAGGACCAAGGCAGTAACTGTGGGACAGGCACAGGCAGAGCCTCCACTGCCAGCCCTCATGACCCAGGGAGAGGGAAGCCTCGTAGGCCAACTGGTAGGACCAACtctggggagagggggaaggtgagACTTGAAGACCAGCGGCAGCAGAGGGTTGATGCTAGGCCCTCGTTGGTTACAGGACGCAGCCCGGCTGGTGTAGGTGGAGACACAGGAGCCACAGGTATGGTGGCCACTTCATCTGAAGAAGGCCTTACTTTACAGACCAAGACAAGTCCATTGAAGTTGAAGTCACCGGGTGAGAAGGCTAGTGCTGTGGTGGGCACAGGGCAGCCTGCATTGGAGGTCACTGTGGTGGGGTCAGGGGTCAACCAGCGTGGTCAGGGTAGAAACATGACCTCTGAGCAGAAGCTGGGTCTCAGACAGGCTGAGGAGCGCCTCTACAGAGACTACATACACAGACTGGTCAAGCCGTCTCCTGAATACCCTAACTTCCAGTATCTATGCAAGCTGTGTTCTGTACACATTGAGAACATACAGGGGGCACACAAACACATCAAGGAGAAAAGACACAAGAAGAACATCATGGATAAGCAGGAAGAGAATGAGCTGCGGGCGCTGCCTGCCCCCTTCCCAGCCCAGCTCGGAGCCGTTGACGCAGCCGTCCTCCGGGCGGCCAACCAACACGGCATCTCAGACCAGGACTTCCTGGTGCGACAGGAAGTGGTCGACAGGATGGAGGAGATCATACAGCAGCACCTCTCAGTTTGCTCCCTTCGGCTCTACGGCTCCTGTCTCACCCGATTTGCCTTCAAGACAAGTGACATTAACATTGACGTCACCTACCCCTCCACTATGACCCAACCAGATGTGCTGATACTAGTACTGGAAATCCTGAAGAACAGCACTGAATATTCTGAGGTGGAGTCTGACTTTCACGCCAAAGTTCCGGTAGTGTTTTGTAGAGATGTCAACAGTAGGTTGTTGTGCACGGTGAGTGCAGGTAATGACGTAGCCTGCCTCACTACCAACCACCTGGCTGCCCTGGCTAgactggaacccagactggtGCCTCTGGTCCTGGCCTTCCGCCTCtgggctaagTTGTGCCACATTGACTGCCAGGCGGAAGGGGGTATCCCCTCCTACTCCTTCTCTCTCATGGTCATCTTCTTCCTCCAACAACGCAGGGACCCCATCCTCCCTGTCTACTTCGGCTACTGGATTGAAGGCTTTGACGTGAAGCATGTGGACGAGTACCATCTGACGGGGATAGAGATGGATATATTTGTGGGGTGGGAGCACAGATCCCCCAGTACAGAGGGACGGGGGGACGGCAGGGGGGAAGGACGGAAGGCCAAGTCTGAGCAAAAGAAACCTGATGTGAAGAACCGGCATGTAGCGGGGAAGACGCGTCTATCCCTGGACCTGGGTAAGGGTGTTTCCCTGGGCCAGCTGTGGCTGGAGCTGCTGAGGTTCTACACGCTGGAGTTCGCCCTGGAGGAACACATCATCAGCATCCGCCTCAAAGAACTTCTCTCTCGAGAGATGAAGAACTGGCCCCGACGCAGGCTGGCAATCGAGGATCCGTTTGCCCTGAAGAGGAACGTCGCACGCAGCCTCAACAGTCAAATGGTCTTTGAGTACATCCAGGAGCGCTTCCGCACCGCCTACAAATACTTTGCCTGCCCGCAGAGCAAGGACCGAAACACCGTGGAGCAGCAGAGAGGCAAGAATACAACCAAACATGGGGGCATGAAGCAGGAGGAAGGCGAAAGAAAGGGTGGAGAAGACGGGTCTGAGAAGAGTGGAGGTGGACAGGGCGATGGGAATGAAGGGAAAAgtcagagctctgagacaggtcAGAAGGAGGATGGTGAGAGTGATGAAGAGGAACGGGCTGAGCGGActcaggagaaggaggagagggcatTGAATGGCGGGCTTATGGACTTGGTCCTTAGTGGGGGGGGGACTTCAACGGATGGGGCTGTAGCGGAGCCTGGCACCACTCTGGAGCCTTCCTCCGCCTCAACCCACAACGGCCTACTGGAtagggatgaagaggaggagaaccatGTGTCAGAGAAGCAGGGACACATTGCACCAGAGGACCTGCACTATATCTTTGACAGAATGATCTTCACTGGCGGAAAGCCTCCTACAGTCGTGTGCAGTACATGTAAGAGAGATGGCCATCTGAAGGACGAGTGTCCTGAGGACTTCAAGAAGATCGAGCTCAAACCGCTGCCCCCCATGACCGACCGCTTCAGAGACATCCTGGATGGCCTTTGTAGACTCTGCTACCATGAGCTGTCCCCTTCCCCTGGAGAGCAGCAGAAGAGAGAGCAGATCCTGGGTAGTCTGGAGAGGTTCATACAAAAGGAGTACAATGACAATGCCCAGCTGTGTTTGTTTGGTTCCTCGAAGAACGGCTTTGGCTTCCGTGACAGCGACCTGGACATCTGCATGACCCTGGAGGGCCATGATACAGCAGAGAAGTTGAACTGCAAAGAGATCATCGAAGGCCTAGCCAAGGTGCTAAAGAAACACACAGGTCTGAGGAACATCCTGCCTATCACAACAGCCAAAGTGCCTATTGTGAAGTTTGAACACAGACAGAGCGGACTGGAGGCAGACATAAGCCTCTACAACACTCTGGCTCAACACAACACCAGAATGCTGGCTACCTATGCTGCCCTAGACCCTCGCGTGCAGTTCCTGGGATACACCATGAAGGTGTTTGCGAAGCGCTGTGACATAGGTGACGCGTCCAGAGGAAGTCTGTCATCCTATGCCTACATCCTCATGGTGCTCTACTTCCTGCAGCAGAGACAGCCCCCTGTCATCCCTGTTCTCCAAGAGGTCTTTGATGGACATTCTGTACCGCAGAGGATGGTGGATGGTTGGAATGCCTTCTTCTTTGATGACATTGAGGAACTGCGTCAGCGTCTGCCAGAGCTTCCGCAGAACCGCGAGACTGTGGGGGAGCTGTGGCTGGGCCTGCTCAGGTTCTACACTGAAGAGTTTGACTTTAAGGAACTCGTCATCAGCATCCGCCAGAGGAAACGACTCACCACCTTCGAGAAGCAGTGGACCTCCAAGTGCATCGCCATCGAAGATCCCTTCGACTTGAATCACAATCTTGGTGCTGGAGTTTCTCGCAAAAtgactAACTTCATCATGAAGGCCTTTATCAACGGCAGGAAGCTGTTTGGTACTCCTTTCTACCCCCAGCCTGGCATAGAGGCGAACTACTTCTTTGACTCCAAGGTGCTCACGGACGGGGAACTTGCACCTAATGACAGGTGCTGTCGGATCTGTGGCAAGATCGGTCATTACATGAAGGACTGCCCCAAAAGACGCAGGTACACAGGGAGAGAACATCAGGGGATGAAGAAGAAGGAGAATGAAAAAGAGGAGGATGTCAAGGATGGAGACGATCATGAGCCTCGGGAGCGTCGCTGTTTCCAGTGTGGTGAAATTGGTCATGTACGGCGGGACTGCCCAGAGCACCGCCACCTTAGACAGAAAGCCGCAGGgggaccagTTTCCCACATAGTGCGAGCCATGGCAAGCTCCCAGTCCATCCCCATCCCCCAACCTCCCCAGGACCTCCCTGGACGCTCCAGACAACCTTCCGAATGTtCTGATTCCCGCCAGACTCCGCCCTATTCCCCTCAGCCCACCCTGTTCTCCCAGGGTTCGAGCCAATCCTCCAGCTCCCCCCAGCCCTCCTCTTCCAAGACCTCCACCTCCGCTGGAGGGGTACCCCACAAGCAGCCCCAACATCCCcagATCCGGGCTACCAGACCCAGTTTGGGGGGGTGAGTCAGCAGGGCTCTAGGAATTGGGAGCACAGCAACGCATCCCACTACTCCCAGTCCCCGTCCTGGCCCTACCGCATGCCACAGAAATTCATCCAGCAGGGCAACGGGTGCTACCCACAACCCGGCAAGCCCGTCATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2550046 lncRNA downstream 6653 36513418 ~ 36517232 (-) True G2230188
TU2550045 lncRNA downstream 9919 36511693 ~ 36513966 (-) False G2230188
TU2550028 lncRNA downstream 21793 36489283 ~ 36502092 (-) True G2230176
TU2549621 lncRNA downstream 251785 36271198 ~ 36272100 (-) True LOC110521774
TU2549337 lncRNA downstream 422573 36100824 ~ 36101312 (-) True G2229535
TU2550093 lncRNA upstream 82328 36623555 ~ 36623791 (-) True G2230235
TU2550096 lncRNA upstream 88486 36629713 ~ 36629990 (-) True G2230238
TU2550128 lncRNA upstream 134958 36676185 ~ 36682460 (-) True G2230260
TU2550130 lncRNA upstream 137696 36678923 ~ 36723317 (-) True G2230261
TU2550133 lncRNA upstream 166870 36708097 ~ 36710321 (-) True ccdc17
XM_021599624.2 mRNA downstream 155395 36284846 ~ 36368490 (-) True zc3h3
XM_021599623.2 mRNA downstream 248297 36271112 ~ 36275588 (-) False LOC110521774
XM_036968974.1 mRNA downstream 556915 35900475 ~ 35966970 (-) False LOC110521773
XM_036969217.1 mRNA upstream 29851 36571078 ~ 36597414 (-) False LOC110520995
XM_036969218.1 mRNA upstream 29851 36571078 ~ 36597414 (-) False LOC110520995
XM_036969219.1 mRNA upstream 29851 36571078 ~ 36597414 (-) False LOC110520995
XM_036969221.1 mRNA upstream 29851 36571078 ~ 36597415 (-) True LOC110520995
XM_021599631.2 mRNA upstream 61969 36603196 ~ 36614084 (-) True LOC110521778
TU2549451 other downstream 309500 36213146 ~ 36214385 (-) True G2229647
TU2548951 other downstream 724528 35798804 ~ 35799357 (-) True G2229175
TU2547499 other downstream 1981266 34542217 ~ 34542619 (-) True G2227801
TU2547162 other downstream 2200230 34311142 ~ 34323655 (-) True G2227478
TU2546396 other downstream 2713991 33809379 ~ 33809894 (-) True G2226745
TU2551806 other upstream 959983 37501210 ~ 37523006 (-) False LOC110521791
TU2551810 other upstream 960184 37501411 ~ 37523006 (-) True LOC110521791
TU2552914 other upstream 2224195 38765422 ~ 38767903 (-) True G2232820
TU2553511 other upstream 2297679 38838906 ~ 38856691 (-) False LOC110521806
TU2553522 other upstream 2297679 38838906 ~ 38856691 (-) False LOC110521806

Expression Profile