RNA id: XR_005041066.1


Basic Information

Item Value
RNA id XR_005041066.1
length 136
RNA type mRNA
GC content 0.49
exon number 1
gene id LOC118945913
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 36701370 ~ 36701505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGGCCCTCATCGAAGCCGATTTGGCATACTCTCTCAGCGGCGTCGGTCAACAAAGGAGCTAAAAGCGTCTTTTACCGACGACCGCTGTTTAGATCTCTTGTAGCTTTTcagcaacagtttgggaaagaaCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2549865 lncRNA upstream 53433 36644590 ~ 36647937 (+) True G2230020
TU2549885 lncRNA upstream 74135 36627015 ~ 36627235 (+) True G2230040
TU2549798 lncRNA upstream 177686 36520347 ~ 36523684 (+) False G2229959
TU2549802 lncRNA upstream 177686 36520347 ~ 36523684 (+) True G2229959
TU2549366 lncRNA upstream 542463 36158642 ~ 36158907 (+) True G2229564
TU2550154 lncRNA downstream 45919 36747424 ~ 36747831 (+) True G2230283
TU2550169 lncRNA downstream 61620 36763125 ~ 36766969 (+) True LOC110520996
TU2550230 lncRNA downstream 102523 36804028 ~ 36804227 (+) True G2230359
TU2550248 lncRNA downstream 114631 36816136 ~ 36816547 (+) True G2230377
TU2550250 lncRNA downstream 115111 36816616 ~ 36816816 (+) True G2230379
XM_036968902.1 mRNA upstream 15439 36676157 ~ 36685931 (+) False LOC110521781
XM_021599636.2 mRNA upstream 15439 36676390 ~ 36685931 (+) True LOC110521781
XM_021599626.2 mRNA upstream 184137 36503151 ~ 36517233 (+) True LOC110521776
XR_005040945.1 mRNA downstream 34420 36735925 ~ 36740556 (+) False LOC118945805
XR_005040946.1 mRNA downstream 34420 36735925 ~ 36740556 (+) False LOC118945805
XR_005040947.1 mRNA downstream 34420 36735925 ~ 36740556 (+) True LOC118945805
LOC110520996 mRNA downstream 59437 36760942 ~ 36767311 (+) False LOC110520996
XM_021599647.2 mRNA downstream 66754 36768259 ~ 36791935 (+) True LOC110521785
TU2548707 other upstream 898402 35801032 ~ 35802968 (+) True LOC110521770
TU2548634 other upstream 965970 35693310 ~ 35735400 (+) True LOC110521768
TU2548536 other upstream 1182128 35518234 ~ 35519242 (+) True G2228777
TU2548066 other upstream 1511219 35181969 ~ 35190151 (+) False LOC110521757
TU2545552 other upstream 3096476 33572140 ~ 33604894 (+) True G2225948
TU2550824 other downstream 883521 37585026 ~ 37587002 (+) True insl5a
TU2551325 other downstream 1621855 38323360 ~ 38336981 (+) True G2231371
TU2552745 other downstream 2088810 38790315 ~ 38790675 (+) True G2232661
TU2552955 other downstream 2111145 38812650 ~ 38813379 (+) True G2232855
TU2553172 other downstream 2473141 39174646 ~ 39176693 (+) True LOC110521001

Expression Profile