RNA id: XR_005040945.1


Basic Information

Item Value
RNA id XR_005040945.1
length 1865
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC118945805
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 36735925 ~ 36740556 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCTGACCACATGATCTCCAGGGTGCCGGGGGAGGCCAGGGAGATGAACACATCCTCGGGACAACAGGGTActggggacggacagagagagagagagagggagagaGTGGTGTAGTTGAGCACGGGGCCCGGTGGGCTGGATCCAGCCAGGCTGAAGGCGAACACAGTCATCAGGTGATGAACTCCTCAGGAGCAGAAGGGATGCTGGGTCCTCCCTCGTTGATGGCTGTCACTGTGACGGTGTGTCTCTGGCCACACCCCACGGGGGCCAGTGTGCAGGCGCCGGTGGTAGAGGTACAGTTCAGCCCCTCTGAGCTGAAGGCCAGGTACTCCCCTGCCCCCTGAGATGGAGCCCAGGACACCGACAGACCGGCCTCAGAGCCCACCATCCTCACCTCCAACTCAGTGAGCACAGGGATGCAtggacctggagggaggagagagaaacaacatgagcacacacacaattAGACGGTGAAGTCGTCTCCCTGTCTTTTCTCGGGGTCCCAGGCGTTGCCCTTGATGCAATAGGTTGTCCCAGCCTCCAGGCCAGAGAAGGTCACGCTGGTGTCAGTGGTGTTGAGCTTCACCCTGCTGTCTGAGCCCTCCATGATGATGCTAATGGTGTACAGGAAAACGTGGTCCACAGGCTCCCACTCCACCACAATGGTGTCATTGCTGGGAGAGGTGGAGTTGAGCTTGGGCGCAGCAACCACTTTAGGAGAGAGTCAGCAATGAGACATGTTATGTAGagtgtgtatttgtttgtctgTGTTGGGGGTGTTCATGGTTTGCCTTTTAATTGTGTGATATCATTCAGAAAGCTCTAAAgtgtattttctgttctgtggGATCACTTTACAATGTATTTCTACATGACTGAGATTTGAGACGATtaacattctctccctctcctctgccttCTAAAGAAGGTCAAACCACAACACAATAGGATGAAACTGCTGGTGGCTTGTTTTGGTACATGAAGATATCCGATAGGCTGACTAACTCAGGTCCTATTCCCAGGGTAACCAACGCAGTGTTCTCAGTTGTCAACCCAGTTAGGTTTATTCTTTGTGTATGGAGAGGGGTCAGATATAATTACAGCGGATACCTCCCTCCTCAGGGCAGCAAGATCATCTCACTAATAGAGGAAAGTACCGGATTTGCAATACCTCATCTGAAATCAAGTTTTTAAGGTCAGGTATGTAGCTACAATCCTCTTCCTGGCTTTGGCTCATTTACGTCAGCAAAGAGATCGAGTGACTTATGGTGGGGGCACTGGAGATAAAGGTTGTTACTGTTTTCCCTATCAATGACTAATTTCTTTATACCAGGCTTTCATActcttgtgtttttttttctttccccCAACAGACGGTGAATGTGAATGTGAGATACAAGGGACAATACCTGTCTTTGCTACCACAGGGAGGGAAGGCTGGCTCCTGCCTCCGCTGTTGATGGACATGACACTGAGAGTGTAGTCGGTGTAGGCCTGAAGGTTGAGCACGGTCCCAGGGGAAGAGGGCACCTCGGTTTCGTAGAAGAAGGACATGTCGGCGGTCTCGGCACGCAGGATGTAGGAAGTGGCACCGGACACCTGAGTGAACTCCACGGTCATGCTCTCACTCTGTTTTGATGTTGCCATGTTGATGGTGGGCACCTCAGAAGCTACAGAAGGAGAAAAAAACAAGAAGAGGGAATTGTTGAAACTCACCTCtgatgagagagaaaaacagaactGGCCCTGGAGCGGTGATTAATGACAGAATGTTACGAGATCACAACATAATGTATAGCCTATTGTTTCACCATCATCTCCTTAGGGTCACATAGTAGACACTGATTTTACCGGTGGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2549865 lncRNA upstream 87988 36644590 ~ 36647937 (+) True G2230020
TU2549885 lncRNA upstream 108690 36627015 ~ 36627235 (+) True G2230040
TU2549798 lncRNA upstream 212241 36520347 ~ 36523684 (+) False G2229959
TU2549802 lncRNA upstream 212241 36520347 ~ 36523684 (+) True G2229959
TU2549366 lncRNA upstream 577018 36158642 ~ 36158907 (+) True G2229564
TU2550154 lncRNA downstream 6868 36747424 ~ 36747831 (+) True G2230283
TU2550169 lncRNA downstream 22569 36763125 ~ 36766969 (+) True LOC110520996
TU2550230 lncRNA downstream 63472 36804028 ~ 36804227 (+) True G2230359
TU2550248 lncRNA downstream 75580 36816136 ~ 36816547 (+) True G2230377
TU2550250 lncRNA downstream 76060 36816616 ~ 36816816 (+) True G2230379
XM_021599639.2 mRNA upstream 30436 36691416 ~ 36705489 (+) False LOC110521782
XM_021599641.2 mRNA upstream 30436 36691417 ~ 36705489 (+) False LOC110521782
XM_021599640.2 mRNA upstream 30436 36691701 ~ 36705489 (+) True LOC110521782
XR_005040896.1 mRNA upstream 30437 36691416 ~ 36705488 (+) False LOC110521782
XR_005041066.1 mRNA upstream 34420 36701370 ~ 36701505 (+) True LOC118945913
LOC110520996 mRNA downstream 20386 36760942 ~ 36767311 (+) False LOC110520996
XM_021599647.2 mRNA downstream 27703 36768259 ~ 36791935 (+) True LOC110521785
XM_021599654.2 mRNA downstream 322337 37062893 ~ 37065854 (+) True LOC110521788
XM_021599659.2 mRNA downstream 844433 37584989 ~ 37587001 (+) False insl5a
XR_005040901.1 mRNA downstream 1297811 38038367 ~ 38056640 (+) True LOC118945789
TU2548707 other upstream 932957 35801032 ~ 35802968 (+) True LOC110521770
TU2548634 other upstream 1000525 35693310 ~ 35735400 (+) True LOC110521768
TU2548536 other upstream 1216683 35518234 ~ 35519242 (+) True G2228777
TU2548066 other upstream 1545774 35181969 ~ 35190151 (+) False LOC110521757
TU2545552 other upstream 3131031 33572140 ~ 33604894 (+) True G2225948
TU2550824 other downstream 844470 37585026 ~ 37587002 (+) True insl5a
TU2551325 other downstream 1582804 38323360 ~ 38336981 (+) True G2231371
TU2552745 other downstream 2049759 38790315 ~ 38790675 (+) True G2232661
TU2552955 other downstream 2072094 38812650 ~ 38813379 (+) True G2232855
TU2553172 other downstream 2434090 39174646 ~ 39176693 (+) True LOC110521001

Expression Profile