RNA id: TCONS_00005359


Basic Information

Item Value
RNA id TCONS_00005359
length 1272
RNA type mRNA
GC content 0.46
exon number 3
gene id XLOC_002903
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 34737322 ~ 34871737 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACGACGGTCTGTCAGAAAACGAGCACCAGCTGTCAGTGGCAGGAAAGATCAAGAAGCACTTTAACACTGGACCCAAACCCAACACTCCAGGAGTCACCGTCATGACGCTCGACCACGACTTCTCCATGCAGAGATCAGGGTCGCTGGATTTCTATCAGAACCCGGGAATGTTCTGGATCAGACCACCGCTCTTGATAAGGAGAGGCAGATTCTCAGACGAGGACGCCACCAGAATGTGAGCGCAGCTCTCTGGATCACCCAGCCGACCTGTAGCCTCCACATCCCAGCCTTTACACCCCATCTGTGCCCCAGTCTACACCTCCAGCCCTCGTTCCCTATGGGACCCCCTGCTCCAGCCCTGGTCCCGAGCCTGTGTCCCGCCACCGCCACCTCCACGCCCGAGTCTGAAGACTTTTCGGCCTGCTCCACGGAGACTGTCCGCTCCCTCTTCTCCCCCTTCTGAAGAGAAACGGAGCGAGGGCACTAATAGAGAAGAAGGGTTTATGAGGATTCGGAACGCGGCCGAGTGGACCAAACCATTTTGTAATCCGATCACAGGGGGAAAAATGACCATCGACGAGGGAGTTTCTAGTTTATTTGTggtcattcttttttatttctttatacatgatacgttttttttattcaacttttCTGTTGAAGCACCTTAGAGATTTAATGTTTTTATGGGTCCGGTGGTGTTTATATATTCCAGATGGAAACTGTAAGGATGATATGTTTAGTTAGGAATAACCCGTGTTCCCCCTCCCCTCCAAAAAAATGGGTAGAAATGATTTTCTTTGCTTTTTGTGGCACTGGACGCACAGCACTTGTTCATACAGTATGTGAGATGGGGACCTTTTTTTGTAATCagtgtaaataatataatttcaattaTTTTGATATTGACAATATATTTCTTTAACTAGACGATGTAAGTCACATTTAAaccatttttgcagtttttaggTATATGGAACATAAGCACAAATGCGTCGTGGGGAAGACATAAAGCAACATTCCGTAACACAGGGTCAGTTCTTGGGAATAGCGTGTGTTGGGATTCATTTGGTGTCATGGGTGCAGGACATTCTGCTGCGCAATGTGGTCAGATTTTGGGGGGTGGAGTGTTCCTGAAGCGCAGTAAGAGGTTTTCTAGTAACTCATAGCCCTGCTTACTGTCTCATTGTATTCTCTCGTTAGTGCATGGAATACAGAGTGGCTCCTACATTATAATTTGAGACAATAtcttattaaaaaacatattacaa

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-124 Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to act upstream of or within intracellular signal transduction and protein phosphorylation. Orthologous to human DCLK1 (doublecortin like kinase 1).

Ensembl:

ensembl_id ENSDART00000163072

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006086 lncRNA downstream 538756 34196782 ~ 34198566 (-) True XLOC_002900
TCONS_00005339 lncRNA downstream 856958 33876131 ~ 33880364 (-) True XLOC_002891
TCONS_00006085 lncRNA downstream 1072533 33663165 ~ 33664789 (-) True XLOC_002890
TCONS_00005338 lncRNA downstream 1118380 33617624 ~ 33618942 (-) True XLOC_002889
TCONS_00006084 lncRNA downstream 1572749 33158589 ~ 33164573 (-) True XLOC_002877
TCONS_00006087 lncRNA upstream 10572 34752310 ~ 34772155 (-) False XLOC_002903
TCONS_00005364 lncRNA upstream 26118 34767856 ~ 34772211 (-) False XLOC_002903
TCONS_00006088 lncRNA upstream 26238 34767976 ~ 34772211 (-) False XLOC_002903
TCONS_00005773 lncRNA upstream 26273 34768011 ~ 34768673 (-) False XLOC_002903
TCONS_00006089 lncRNA upstream 128551 34870289 ~ 34871737 (-) True XLOC_002903
TCONS_00005356 mRNA downstream 494053 34220492 ~ 34243269 (-) False XLOC_002901
TCONS_00005357 mRNA downstream 494053 34240084 ~ 34243269 (-) True XLOC_002901
TCONS_00005354 mRNA downstream 513755 34171674 ~ 34223567 (-) True XLOC_002898
TCONS_00005355 mRNA downstream 536572 34187231 ~ 34200750 (-) True XLOC_002899
TCONS_00005353 mRNA downstream 562464 34171674 ~ 34174858 (-) False XLOC_002898
TCONS_00005363 mRNA upstream 2734 34744472 ~ 34772213 (-) False XLOC_002903
TCONS_00005365 mRNA upstream 26118 34767856 ~ 34867401 (-) False XLOC_002903
TCONS_00005366 mRNA upstream 130457 34872195 ~ 34889053 (-) False XLOC_002904
TCONS_00005368 mRNA upstream 147590 34889328 ~ 34907477 (-) False XLOC_002905
TCONS_00005369 mRNA upstream 164242 34905980 ~ 34916208 (-) False XLOC_002905
TCONS_00005358 other downstream 409928 34327262 ~ 34327394 (-) True XLOC_002902
TCONS_00005343 other downstream 703901 34032283 ~ 34033421 (-) True XLOC_002893
TCONS_00005331 other downstream 1360108 33377130 ~ 33377214 (-) True XLOC_002885
TCONS_00005330 other downstream 1360236 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005329 other downstream 1360381 33376818 ~ 33376941 (-) True XLOC_002883
TCONS_00005381 other upstream 242880 34984618 ~ 34992414 (-) False XLOC_002907
TCONS_00005403 other upstream 628099 35369837 ~ 35387242 (-) True XLOC_002918
TCONS_00005406 other upstream 878595 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005408 other upstream 912507 35654245 ~ 35654354 (-) True XLOC_002923
TCONS_00005410 other upstream 1421441 36163179 ~ 36163294 (-) True XLOC_002926

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU14046 True 110 lncRNA 0.39 1 CI01000001 437528 ~ 437637 (+)
bowfin (Amia calva) TU14046 True 5622 lncRNA 0.38 1 CM030122.1 8326182 ~ 8331803 (-)