RNA id: XM_036969046.1


Basic Information

Item Value
RNA id XM_036969046.1
length 6456
RNA type mRNA
GC content 0.49
exon number 27
gene id LOC110520999
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 37588048 ~ 37698966 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAACGTTATGATTTAATCAGGTGATAATATTGTAGAGAACAATTTAATGGTATGTAATGTATAATGGCATAGGCTAAATAAAACAAAGTAGACATTCATTTAGTAGCACCCTCTTTGAATTTACCCATATTCCACTACATTCTAGAAAACGTTGTGTTTTAACGCCCAGAGAATCCAGTGTAGCTCTACTGGAAAAGCCAGCCGACTTCACCACAACACATGTCCCTGTGCTGCTTCACTCGTGACAAGTACAGCGACATGTGCATATCAACTCTAATGATGCGGAGACACGGGCACTGAACTAACTACATGGCAATTCTGTTGAATAAATACCTATTTTACACTGCAGAGAGAAGACGACGGACGCACAGACACTGCCGTCCATCTCTATTTCCCATCCCTTcgtccttccatctctctgtccccctgtggATATTCCAGATATGTGACCTGCTCCATGGAGATTGCTGTAGATGGCTGAGGAGCTGTGTACCGGCTGGTTTCGCATTGTCGCAGGCTCTTTGGAGATAGAGGAATGCAAATCTGCAATCATGATGGAAGGATTGAAAAAGCGTACCAGGAAGGCCTTCGGGATAcggaagaaagagaagggagacaaggacaatgactcaacGGGGTCCCCTGACAGAGAAGGGGGTGATTCCCAAGAGATTGAATCGTCACAGAAGAAAGCCAATGGTGCGGCTGTCAATGGATTCTCTGGAGAGATCGACTGGGACAGATATAACACCCCTACGGTGGACGATGAAGGTTACAGTCTCAGGCCAGACGAGGAGGAGGGGCCAGGATCAGCTGGCTCCAAACCACCCAAGGAACACTTCTTCTCCTCCAGCGAgtcggagggagaggaggaccacCGGAAAAAGTTTAAGATCAAGATTAAACCATTACCAGCGGAAAGTGCCAACTGTTTGGCCCCGTCAGTAGATGAACTCAAAGCCTCCATAGGCAACATAgctctgtctccttctcctctgAGACGTAGCCCGGGGTTGATGACAAAGGACTCTGGTGAAGAGATACAGGTGGCTCGGCCAAGACGTCCTGCACCCATTGAGGTCCCCACATTGGCAGCCCCGGCGCTACAAGTTCCCAGAAGTAAGAGAGCCCcagcagtaccagtaccagagaAGAAGGCAGCGCCAGTACCAGAGGACACTGCAGCCTTATTTGGGCCTCCGCTGGAGACAGCCTTCGGAGAGCAGAAAACTGAAGTGGGTATATCTGAGCCAGTGGTGTGTGGCGTATGGGGTGCTCCTCTACCTGAGTCTGAGTCACTGAGCCCAGACTTCTCTTTCACAAGAGCCTTCCCTACAGGCACTCCGCCCCCGCTTCCGCCCAAGAATGTCCCGACCTCCCCCCCACTGACTGGCTCCCCCTCTGCAGATGCTGCTGGTTTGTCAATAAAGGCAGAAGGCTCAGGGAGGAAGACCTCCGTCCCAAACTTGGATAACATTTTCGGCCCAGCGGAACCCCCTGCCTTTGGCGAGGAATCTGCCGACAAGTGGATCTGCTTCAGCGAGGAGGAATCCGCAGCCTCTGAAAAACCACCCCCACCAACGTCCCCACCCCCTCCAGAAGATCCCCCCGCCCCTCCTgtacccacctcccctctccctctggaTGACCCtgtccctgccccctctctctcccctctccccacctcccctcccccacaGGAAAAACCTGTCTCTCCATTACCCACCTCCCCACCCCCTACAGATGAACCAGTGCCCCCCCTACCCACTGTCCCACCCACGCCGAAAGACCCTACACCCCCACCCTCACCACTTCCTCCAAAGGACCCTACACCACCCCCCACTCCCACACCCACTGTTGTCCCCACTCTCGACTTAACATCCAGCATCGCCCCTGCTCCCCTTGTCACCTCACCCACCAGCGTTGCCCCTGTCCCCTCTGCAGTTCCGTCTTCTCCCAAAGCAAGCACACCTGTCTCCCCCACCTGCCCCCCTGCCCCTATGGAGGCACCCTCACGCACCATCCCCCGGCCCCTCGTCTTGGCCGCGGAGGAACAGATGAGCCCTGAAGCAGCAGCTCTGCCTGTCCCACCTGCCCCTCCGAAAGAGGACCTCAGTGAAACCACCATCACCCTGTCACCCAAAGATGCTGGCCAGGTGTCCCGTGTtgcacctccccctcctccaccccctacATACAGGGCAGTGGTGTCCTCTCCAGGACCAACGACAGGGGGTACGGGTAGTGGAGCGTCCTCTCCGGCTCGACCTGCTACACCGTCAGCTCCATCAGCTGTTGTCAGcagccccaccccacccccacctccGCCACGCCCTTCTTCACGACCCAAACTGCCTCCCGGGAAACCTAGCATGGGGGACGTGAGCCGGCCTTTTAGTCCCCCGGTCAGTCACTCGTCCAGCCCCCCTCCAGTCGCCCCCCTGGCTCGGGCCGAGAGcacttcctccatctcctccaacAACTCCTTGAGTGCAGCCACCACCCCCACCGTCGGTAAAGATCTCACTGTCtctgtgtcagAGAATGACCAGCCTTCCCTGGTTTGGTTTGACAGAGGAaagttttatttaacctttgaaGGCTGCTCCAGGGGCCCCAGCCCTCTCACCATGGGGGCCCAGGACACCCTTCCGGTGGCAGCAGCTTTTACTGAAACAGTCAATGCCTTCTTCAAAGGAGCCGACCCCAACAAGTGTGTTGTGAAGATCACAGGTGAGATGGTGCTGTCGTTTCCAGCGGGGATCACTCGGCACTTTGCCAATAACCCGTCCCCTGCCGTGCTAACCTTCAGCATAACCAACTACAGCCGGCTGGAGCATGTGCTGCCTAACCCCCAGCTACTCTGTTGTGACACCGTCACAACACCCAACCCTGACTGCAAGAACTTCTGGGTGAACATGCCAAACCTGATGACCCATCTAAAGAGGGTGGCTGAGCAGAAACCCCAGGCCACATACTACAATGTGGACATGCTCAAGTACCAGGTATCAGCGCAGGGCCTCGTTTCGACACCCCTGAACCTGGCAGCCAGTTGGCGGTGTGTGCCCACCAGCACGGACCTCCGAATAGACTACAAATACAACGGCAGCGCCATGACAACACCCGTGGCTCTCAACAACGTCCAGTTCCTGATCCACGTGGACGGAGGGGTCACCAAGCTACAGGCTGTGCTTCCCCCTGCCGCCTGGAACGCAGAGCAGCAGAGAATCCTGTGGAAGATTCCTGATATTTCCCAGAAATCTGAAAATGGAGGCGTTGGCTCATTGTTGGCACGGTTCCAGCTGTCGGAGGGTCCCAGTAAGCCCTCTTCCCTGGCGGTCCAGTTCACCAGTGAGGGCAGCACTCTGTCAGGCTGTGATATAGAGCTGGCAGGGCCCGGGTACCGCTTCTCACTCGTCAAGAAGAGGTTCGCAGCAGGAAAATACTTGGCAGACAACTGATACTCCACCCTACTACTGCACAACACTACTGAACAAATACACTGAACATCATCATCTCAATGGACTTCGACTGAGTAATGGAAACCTACAACACCACCACCtccctacagacagacatacaaacaCTCCTTTCTAAACCTGCGAGATAGACAGGCCCAGGCCACACCGCCTACTGTACCCAGCAGTATTGTATAACTTGCATTTAGCGTTGTGGACAGTTTTAAAGGTGTAATTATTGTATTTGTAAAATGTATTCATTTCAGAACATCTGTATTGCTGCAGTTATAGACACCCATCCCAGGTTTACCCTCTCTAAAGCTACatgcctctgtctccctcccctctccaagaTGTGGTGTTGTTTAACCCTTAACGCAGCTGCCTAGCTAATCAACCGCACCGCAACCACAAACCCACGGTTTCAATGGTGAACAAAACACTATTTATTTTAGACGCATTAACAAAGATGTTATGCTAAGAGAGGATGAGGATGCATGTAAAAGAAGACTGCTTGGTTGTGTCATTGCGTGAACTATAGATGTATAGGCGCACCATGATGTGAGAGGTTTCGCTCTCGCCAAAATCTTTTCAAAATAAGCCCAGTGTGCTTCCTTTTGGACTTAAGCTttgtcgcctgccttcccgcctttgggacgACTCCTCCCAATGTTAGGGGCCGGAGACCTGAGCATCTCGTCATAATATACAGATCTCTGGCTTAACAGAGGGGCTAGTTCTTTCTCATGCTGCCTCTCGCATGCCTGTATTTAGACACAGTTAGAGCTACCATAGGATTCTGGGTGATGGAGTTTTTATAGCTTTAACAGTTGATTTGTTAGCATGCCCTCTACAAAGGCACTACAGGGTCAAAGGACATTGTTTATTTGGATGATGTAATTCACcgccacactcctcctctcccttctttgAATGCACTGATTTAATACCCGGTTGAAGCATTTACTCTCATAATTCTCCTGAGTCCTGAGTAGTTGGGCAGCTGCAACAATAAGTCAATTCCTGGTTGCAATATAAAACAAATATAAGACGTTTCCCTTTAGAAAAACCTGTACAAAGTGTCATTTTAAATTGATAATATATATCTTAAAGGGCGTTTTGGTGTTTTCCTTGTATTGTCAAAGAGCCTTTGTTGTTCCTGAGACAGCAGTGGCAGACTTACTTCAGAGTACATTACAgcattctattttttatttattgatgATAATGATTTATTGTATAAAGTATGTGACTCTGTATATGAATATAATTTGATGGTATCACAATTTAGAATCCTTAAAGGTATACATATTTGAATGATCTTTTTTGTTATTTGTGTAGTTGGGTAACCtgtgtacagtataatgtataaGGTATTATTTTTTGAATTGATTTGAGATATACTTTTTTTAAACTCAAGTGCAACAGACCATTTGAGGTATATATGGGCATTGGGTGGGAGGGGGTATAAAACGACAAGAAAAAAAACCCAAGATGAATAACGACCTGGATGTGTACGTCATGCTTTATGAAAGTTCTGACCATGGATCGTCAGTCAGCTTTTGACCATTTTAGGCCCTATTCCCATTCACCGCGATGCGTTCCTACCCACCTGAAACCCCCTGAATGGATATTATTCTGCATCAAACAGCATGACCACTCCCCTTCAGATCAAACCAACCAGCGCTTGAATCCATGGTTTTATTTTGCATAATGGTAACGGTCTCTGTGAGATGACATGGTGACGAGATTTTTGGAGGGAGGTTAGATGACCAAAACGCTTTTTTGTATTTATGTATGTGTACTCCAGACAGTCCTCTATAAGAGCGAGAAATAAGCTGAATATTTTTAAAActgacacacaaaaacaaaaaaaacgtatttcaTGTGAAGAGCGCTGTGCTGATAATGTTATTAACTCCCTGAATGCTCTGATCTTCAACATAGAGAACAAAAATGTGTGTGATGACATTTAACTTAAGAGGTCTCCTCATGTAGGCATCGTAAATATGTCAAAAATAATATCTGTGCTTCATGAAGCTACATAGCACCATTGACTATGCCGGTCATAGAAGTGTCTTAGAGGGTGTTGCGCTGTGATTACATGTTGATTGCATGTTGTCTGAACATAAAGCAGGCGTTTCTATGTAAGGCATTAATGAATGGTGTGGTGCAGCTCTCCGTATAGCAGTTGAGTAACAAGGGTTCGAGCGGAAGTTTTCCGGCATGGATAATATAATGTACATACAGTTACGGTATAGTCCTGAAGTCAAGTGCTCCACCAACCAACTCTATGACCTGTTGTTTTGTTAAATGTGAGAACTGAAGACCGGAgcagagagtgtgtctgtgtgtggcgtGCTAAGCCAGACTGCTTTGGGTTCTGTACTCGTTCTCTATCAATCACCTGTGCAAGCTGTGTTTGTACAGACCAATGTTCAGAGGAACTGATGGGGAAACTTAGTTTGCTTCTTTCcaaccaaaaaaaaacaacaataaaagTTACGAGCTGGACACATGTTGTGTGGAGCTCTCTTTTCTCTTTGCAACTCACAACGGAAGTGTTTCTCCCCTCTCGAATGCAGTCTATTCAATATGTCCTCCACCCATTTTGAGTTCTGATGTGCGGCACAGCCCGTCGAGGTTGGCTGTAACTGCATCGTCTTTTAAGCCTTCCTGCGAATACGCAGCTGTTTATGATTGTGCGCTACGAGGGATGTCAAACGGAGATGTTACTGTATCATGATTAGCCTTGTGGTTTAATTCAATGTCCTGTATATATTTCTGTTTGCTTCGTTTATATTTCTATGGATATATTTGGGTTTTTTTTTTCATCTATTTGTGTTATCCAATGCACAGGATACTGAATATGCAATTGTTTAATGTAACGTACCGTACTAATGACATGTTATAAACGTATGCGGGATGACCTACTATGCTATCAAGATTTTCAATCATTGTCCGTTTTCTTGGAAATAAAGTAGGCGTATCAATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2551646 lncRNA downstream 231424 37329473 ~ 37356624 (-) True LOC110521790
TU2551528 lncRNA downstream 565201 37022592 ~ 37022847 (-) True G2231552
TU2551442 lncRNA downstream 696272 36891543 ~ 36891776 (-) True G2231470
TU2551437 lncRNA downstream 706751 36881045 ~ 36881297 (-) True G2231465
TU2550249 lncRNA downstream 771512 36816329 ~ 36816536 (-) True G2230378
TU2552037 lncRNA upstream 3773 37702733 ~ 37702946 (-) True G2231991
TU2552039 lncRNA upstream 7277 37706237 ~ 37706499 (-) True G2231993
TU2552048 lncRNA upstream 20120 37719080 ~ 37719638 (-) True G2232001
TU2552050 lncRNA upstream 22668 37721628 ~ 37721858 (-) True G2232003
TU2552376 lncRNA upstream 443012 38141972 ~ 38143264 (-) True G2232312
XM_036969336.1 mRNA downstream 25265 37560230 ~ 37562783 (-) True pars2
LOC110520997 mRNA downstream 28813 37549840 ~ 37559235 (-) True LOC110520997
XM_021599658.2 mRNA downstream 64984 37498832 ~ 37523064 (-) False LOC110521791
XR_005040922.1 mRNA downstream 173891 37410122 ~ 37414157 (-) True LOC118945800
XM_036968554.1 mRNA downstream 231120 37178877 ~ 37356928 (-) False LOC110521790
XM_036969412.1 mRNA upstream 31538 37730498 ~ 37741790 (-) False LOC110521793
XM_036969411.1 mRNA upstream 31538 37730498 ~ 37748352 (-) False LOC110521793
XM_036969410.1 mRNA upstream 31538 37730498 ~ 37818330 (-) True LOC110521793
XR_002473213.2 mRNA upstream 129106 37828066 ~ 37829673 (-) True LOC110521794
XR_005040981.1 mRNA upstream 224886 37923846 ~ 38011831 (-) True LOC118945821
TU2551806 other downstream 65042 37501210 ~ 37523006 (-) False LOC110521791
TU2551810 other downstream 65042 37501411 ~ 37523006 (-) True LOC110521791
TU2550007 other downstream 1063251 36520352 ~ 36524797 (-) True LOC110521777
TU2549451 other downstream 1373663 36213146 ~ 36214385 (-) True G2229647
TU2548951 other downstream 1788691 35798804 ~ 35799357 (-) True G2229175
TU2552914 other upstream 1066462 38765422 ~ 38767903 (-) True G2232820
TU2553511 other upstream 1139946 38838906 ~ 38856691 (-) False LOC110521806
TU2553522 other upstream 1139946 38838906 ~ 38856691 (-) False LOC110521806
TU2554873 other upstream 2257955 39956915 ~ 39960101 (-) False G2234611
TU2554875 other upstream 2257955 39956915 ~ 39993914 (-) True G2234611

Expression Profile