RNA id: TU2554138


Basic Information

Item Value
RNA id TU2554138
length 3759
lncRNA type sense_over
GC content 0.46
exon number 3
gene id LOC110521817
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 39800038 ~ 39812756 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCCGGGACAGAGGTTCAGGGATCGGGCCATGGGGGTGTTCACTATCTCTGGACGACACATGGACCAGGGTAGGAGGGAGACCACCTCTAGCTTGGCTAACCtcatctgacctgaccaccaGAGACATGGCATGGGATAGGTAGCCCTAAACAGCAGATGACCGCAACACTCATATGGCCCAGATCTTATCCATATATAGGCACCGGGGAGGGTTGGAATTTATTGGTCCGCTCTGGCTTGAGATAGGTGGGCTTAGTTGCTGGGCCCCATTTGGTGTGAACGTTGGGCCACATCCACCTTGCTGTCTGGGAGGGACCAATGGACATCACATGTGAAGATGGAATTTGAGCAAAGTGGCCACCTTTGGAGGAACTAAGTATCAATTCAATTTTGCAGGTCCATGAATTGCAATATGGGATAGAGAGCTGTGTCTACACAACATGTTCTATTTTAATGATTGGCCATCCTTGGATAATTACTTATGAGATGGAACCCCAGCAGAGCACTACTCTCTATAATGTGAAATAAACAGAATGACAATGACACAGACACTGGTCCCAGACACAGAACAAAGATTAAGATTCATAATGTGTCTAATCTAATAGTATCATCCACTACAAAGCAGTTTGTGAAAAAGCTGCTGTATGGAATAATCATATCATAGAATAATGTAAACAGGTTACTGTACAAAGTGATTTCCTGATAAATGTCACATTTTGTCACCTTTTTATGTCACAGGTTTACAGCTGTGTTGGGTAGTCAAAGGCCTTGCAACTCTACGAAGAATCTGAGGAGAATGCCATTGTCGCCTGGTTAAATGGACCTGCTCTTTAGGTGGTGGTGCCAAGTAGGTTTGTGCATTCacgacagagagtgagagagatgaccGCCATGAAACAGTGATGGGAGAGGAAGCGAGAAAGAGAAAACAGTACAATATAGCGACACGAGAGAAACCAGACGAGAAAGAGAGACCGAGCTAAACCCTCAGagaatatgGCAGTAAGCCTAACTggccttacaaccgcagaccacgtgtaaccacgccagcccaggacctccacatccagcttcttcgcctgcgggatcgtctgagaccagccacccgggaCAGCTgatgggtttgcacaaccaaagaatttctgcacaaactgtcagaaaacgtctcagggaagctcatctgcatgctcgttgtcctcaccagggtcttgaccaaattgcagttcagcgtcgtaaccgacgtcagtgggcaaatgttcaccttcgatggctactggcacgctggagaagtgtgctcttcacggatgaatcccagtttcaactgtacaggACAGATGTCATACAGCGTATATGGCGATTGGTTTGCCGATGTCAACATCGGGCACGGTGCCAGGATTTTTTTCTCTCCCGGTGCtaaggggagggtgggggggctTGACCAATACGTGGGGGTGCTAAGAACATTTTCAGGACTATTTACAAGTGCATTTATTCCTGACAATTGTGCATTGGTAATAATGTTTCGGATGAAATGGCTATCACAAGGTCAGAAATGAAATGACTAATATCCAAAGTGCAGCCACAACGAGAAGTGCAATGCATTTAGCCGATGCCTGTTAACTGTGCACACACTTGTAAAACGAACTGGCTATCAGCACAATCTTAGTGATTTATATTTCTATTGCAAACAAAAATAACTTGTAGGCCGATGACATATATGCGTCCGGCTGTGCATTGGTTATAATGTGACCAATTAAATGAAAGGAATAATATACACATTGCAGCCACAATGAGAAGTGTGTTGACCCTATGCCTGTCAACTTTGCCCACATGGTGTAAAACGAGCTGGCTGTCATCACAATCTTAGCGATTTCTATTTCTATTGCAAACATACTTGTAGGCCGACTGGCCGACAATATGCATGCATCTTCTCCGTTCCATCCAGATCCAGATCAGCGCGATTGAATCATGTTCCCACCACCGGGCAGGCGCGCTCTGTCAATGAATAAAAGGTCTTTCAGTTACTCCCCAAGTGTTTGTTTTATAGAAGGACGATACGACGATATGTTGTTGAGTCTATAAACTTCTGCACATTCAGGGCCTTGGTTCTTTCTGCGTGTATGGACAGGCAGGCAAGCTTGCTGAGTCAAGGTTTTGCCCAGTATTTCATTCTGTATATCATGATGCGTGCACTTAGCATTTCTATGATTATCTGATATTTTCTTTGTCGAATTTGCCTCTGACCTGTGAAAGTTCAAGGAAGTTTCCCTCTCTGTGAAAGTCCCTGGAATGCAGTAAAACGCAATGACTCCCCAACTGCTCTCATATATTCTCTGTTCTCTGACTATTTTCGAACGGCCATCACTTAGAGCATGGCATATTGTTGAGCCAGACTCTTTCTGAATAGTCCACTCATTCCCATGCTGTCATTCCATATTTATGCTCCACACTAGCATTGTGTGTCTTGAACAAACTTGTGGCCTTCTTCCAGTTCTGGTAGCCATCGTTGGTAAAAGCTGCCTTCTCTCCACCATAGTTTCCTGGACGTTGAAAATGGCGGCATGCAAAGCAGAAAGCACGGTCCTGTGAGATAGAATATACCAGCCATTTGTAATCCTCATAACATCTACGATTGAAGTAGCGATCCTGCTGTCCAACTTTTGTGGCTGGATAATGCTGAAGAAGAGGGCGCCTTGGTTCTTCAACAGGTGACTGGCTTAAATCAGAGGGAGCGGTGGCTGTGCTAACAGTGCAGCTAGCAGTGAAAAACTGCTCTGGTGCTCCCTCACGTCGTGGCTCACAATTGTTTTTCTCTCCGACTCATCTTTCTTATCTCCCTCTTCTTCGGCCCCCTCACAGGGTCTGGATTTTCATTTTCTACCCGCACTCTTCTCTTGATCAGAAAACAGTCCATCGCAACGGGCGAGATGGGTGACTAGCTAGCTAGAAGTTAGCACACACCAGACACATGAGCACGCAGCCAGGGATCAGATTGGAACAGAATCTCTGGTTATTAACTTTGAcatatttctttatttaaaaaaagaaaataaatactAATGCTTTTGAGGGGGCTTAACTGGGGCTATGCAGATTTGTGATGTAGCTATAACCTCCCCTAGCCCCGGTGTAGCTCCGTGCCTGGTCAACATCGTGAACAGAGTGTCCcttggtggggttatggtatgggcaaacataaactacggacaatgaatacgattgcattttatcgatggcaatttgagaTACCGCGACGAGATCCTGAGgttcattgtcgtgccattcatacgccgccatcacctcatgtttcagcattataatgcactgccccatgttgcaaggatctgtacacaattcctggaagcagaaaatgtcccagtttttccatggcctgcatactcaccagacaagtgagcatgtttgggatgctctggatcgatctATACGACCGTGTTctcaccaatatccagcaaattcacacagccattgaagaggagtgggacgacattccacaggccacaatcaacagcctgatcaactctatgcgaaggagatgtgttgtgctgcatgaggcaaatggtggtcacactagatactgactggtcttctgatccacgcccctactttttttttaaaggtacagtatctgtgaccaacagatgcatatctgtattcccagtaatgtgaaatccataaattagggcctaatgaatttgaATTGACTGATTCCCTTATAAACTGAaacttttaaattgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2554093 lncRNA upstream 164249 39643647 ~ 39643867 (+) True G2233878
TU2554089 lncRNA upstream 166881 39640921 ~ 39641235 (+) True G2233874
TU2554082 lncRNA upstream 172632 39635264 ~ 39635484 (+) True G2233867
TU2554074 lncRNA upstream 180149 39627554 ~ 39627967 (+) True G2233859
TU2553459 lncRNA upstream 195217 39563375 ~ 39612899 (+) True G2233304
TU2554219 lncRNA downstream 37841 39850597 ~ 39852270 (+) True G2234002
TU2554221 lncRNA downstream 39694 39852450 ~ 39855097 (+) True G2234003
TU2554249 lncRNA downstream 98242 39910998 ~ 39911462 (+) True G2234031
TU2554470 lncRNA downstream 116556 39929312 ~ 39929520 (+) True G2234224
TU2554565 lncRNA downstream 287024 40099780 ~ 40100114 (+) True G2234313
XM_021598443.2 mRNA upstream 8634 39772446 ~ 39799482 (+) True LOC110521003
trnaa-ugc-194 mRNA upstream 18887 39789157 ~ 39789229 (+) True trnaa-ugc-194
XM_021599698.2 mRNA upstream 46487 39759901 ~ 39761629 (+) False LOC110521815
XM_021599699.2 mRNA upstream 46487 39760125 ~ 39761629 (+) True LOC110521815
XM_021599696.2 mRNA upstream 85189 39713024 ~ 39722927 (+) True LOC110521814
XM_036968777.1 mRNA downstream 65089 39877845 ~ 39906318 (+) False LOC110521820
XM_036968778.1 mRNA downstream 65089 39877845 ~ 39906318 (+) True LOC110521820
XM_036969224.1 mRNA downstream 98761 39911517 ~ 39918494 (+) False LOC110521821
XM_036969223.1 mRNA downstream 98763 39911519 ~ 39918494 (+) False LOC110521821
XM_021599712.2 mRNA downstream 98764 39911520 ~ 39918494 (+) True LOC110521821
TU2554140 other upstream 66 39800273 ~ 39808050 (+) False LOC110521817
TU2553172 other upstream 631423 39174646 ~ 39176693 (+) True LOC110521001
TU2552955 other upstream 994737 38812650 ~ 38813379 (+) True G2232855
TU2552745 other upstream 1017441 38790315 ~ 38790675 (+) True G2232661
TU2551325 other upstream 1471135 38323360 ~ 38336981 (+) True G2231371
TU2554595 other downstream 330865 40143621 ~ 40144782 (+) True pik3r3b
TU2555824 other downstream 1289682 41102438 ~ 41121090 (+) False LOC110521828
TU2556385 other downstream 1572904 41385660 ~ 41385993 (+) True G2236045
TU2557666 other downstream 2737564 42550320 ~ 42553186 (+) False LOC110521840
TU2557776 other downstream 2917096 42729852 ~ 42730451 (+) True G2237341

Expression Profile