Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021599714.2 |
| length | 1283 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 10 |
| gene id | LOC110521822 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_050570.1 |
| NCBI id | CM025857.1 |
| chromosome length | 46327593 |
| location | 39920864 ~ 39924501 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0006397 | mRNA processing | biological_process |
| GO:0008380 | RNA splicing | biological_process |
| GO:0005681 | spliceosomal complex | cellular_component |
| id | description |
|---|---|
| K12849 | PRPF38A; pre-mRNA-splicing factor 38A |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU2554249 | lncRNA | upstream | 9402 | 39910998 ~ 39911462 (+) | True | G2234031 |
| TU2554221 | lncRNA | upstream | 65767 | 39852450 ~ 39855097 (+) | True | G2234003 |
| TU2554219 | lncRNA | upstream | 68594 | 39850597 ~ 39852270 (+) | True | G2234002 |
| TU2554138 | lncRNA | upstream | 108108 | 39808116 ~ 39812756 (+) | True | LOC110521817 |
| TU2554093 | lncRNA | upstream | 276997 | 39643647 ~ 39643867 (+) | True | G2233878 |
| TU2554470 | lncRNA | downstream | 4811 | 39929312 ~ 39929520 (+) | True | G2234224 |
| TU2554565 | lncRNA | downstream | 175279 | 40099780 ~ 40100114 (+) | True | G2234313 |
| TU2554575 | lncRNA | downstream | 188272 | 40112773 ~ 40113015 (+) | True | G2234323 |
| TU2554582 | lncRNA | downstream | 200047 | 40124548 ~ 40124761 (+) | True | G2234330 |
| TU2554591 | lncRNA | downstream | 217820 | 40142321 ~ 40142561 (+) | True | G2234339 |
| XM_036969224.1 | mRNA | upstream | 2370 | 39911517 ~ 39918494 (+) | False | LOC110521821 |
| XM_036969223.1 | mRNA | upstream | 2370 | 39911519 ~ 39918494 (+) | False | LOC110521821 |
| XM_021599712.2 | mRNA | upstream | 2370 | 39911520 ~ 39918494 (+) | True | LOC110521821 |
| XM_036968777.1 | mRNA | upstream | 14546 | 39877845 ~ 39906318 (+) | False | LOC110521820 |
| XM_036968778.1 | mRNA | upstream | 14546 | 39877845 ~ 39906318 (+) | True | LOC110521820 |
| XM_021599715.2 | mRNA | downstream | 6505 | 39931006 ~ 39957917 (+) | True | LOC110521823 |
| XR_005040910.1 | mRNA | downstream | 34796 | 39959297 ~ 39960096 (+) | True | LOC118945792 |
| XM_021599716.2 | mRNA | downstream | 219089 | 40143590 ~ 40468579 (+) | False | pik3r3b |
| XM_021599719.2 | mRNA | downstream | 503501 | 40428002 ~ 40468579 (+) | False | pik3r3b |
| XM_036969313.1 | mRNA | downstream | 515407 | 40439908 ~ 40468579 (+) | False | pik3r3b |
| TU2554140 | other | upstream | 112814 | 39800273 ~ 39808050 (+) | False | LOC110521817 |
| TU2553172 | other | upstream | 744171 | 39174646 ~ 39176693 (+) | True | LOC110521001 |
| TU2552955 | other | upstream | 1107485 | 38812650 ~ 38813379 (+) | True | G2232855 |
| TU2552745 | other | upstream | 1130189 | 38790315 ~ 38790675 (+) | True | G2232661 |
| TU2551325 | other | upstream | 1583883 | 38323360 ~ 38336981 (+) | True | G2231371 |
| TU2554595 | other | downstream | 219120 | 40143621 ~ 40144782 (+) | True | pik3r3b |
| TU2555824 | other | downstream | 1177937 | 41102438 ~ 41121090 (+) | False | LOC110521828 |
| TU2556385 | other | downstream | 1461159 | 41385660 ~ 41385993 (+) | True | G2236045 |
| TU2557666 | other | downstream | 2625819 | 42550320 ~ 42553186 (+) | False | LOC110521840 |
| TU2557776 | other | downstream | 2805351 | 42729852 ~ 42730451 (+) | True | G2237341 |
