RNA id: XM_036969074.1


Basic Information

Item Value
RNA id XM_036969074.1
length 5152
RNA type mRNA
GC content 0.48
exon number 34
gene id LOC110513710
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 43536224 ~ 43546571 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTCTTTAAAAGGCGTTCTGGGACTGTTGTTCCTCACATCACACTGGCCATGAGAGCAGTAGTACTTGCACTGACTCTAGCCCTTGTGGCGAGTCAATCTGTTAACTTTGCCCCTGATTTTGCTGCCAGTAAGACCTATGTGTACAAGTATGAGGCACTGCTCCTGGGTGGTCTGCCAGAGGAGGGTCTGGCTAGAGCTGGAGTAAAAGTAATCAGCAAAGTTCTTATCAGTGCAGTTGCAGAGAATACCTACTTGCTGAAGCTTGTGAACCCTGAGATCTTTGAGTACAGTGGTGTGTGGCCCAAAGATCCTTTCGTCCCAGCTGCAAAACTCACTTCAGCCCTGGCTGCTCAGTTCTCGATTCCCATCAAGTTTGAGTATGCCAAGGGTGTTGTGGGTAAGGTACTTGCCCCCACTGCTGTCTCTGAAACAGTGCTGAATGTCCATAGAGGTATCCTGAACATTCTTCAGCTCAACATCAAGAAGACACAAAACGTCTATGAGTTGCAGGAGGCTGGAGCTCAGGGAGTGTGCAAGACCCACTATGTGATCAGGGAAGATGCCAAGGCAGAGCGCATCCATTTGACCAAGAGCAAGGATCTCAATAACTGTCAGCAGAGAATCATGAAGGACTTTGGTCTGGCTTACACAGAGAAGTGTGTAGAGTGCCGGCAGAGAGGGGAGGCCCTGATGGGAGCTGCCACTTacaactacctcatgaagcccgCTGACAATGGTGCTCTGATCTTGGAGGCCACTGTTACTGAGCTCCATCAGTTCACACCATTCAATGAGATGTCAGGAGCTGCCCAAATGGAAGCAAAACAAATGTTGACTTTCGTTGAGATCAAGAAGGATCCAATTATTGTCCCCGATAATAACTATGTTCACCGTGGATCCATCCGGTATGAGTTTGCCACTGAGATTCTCCAGATGCCCATTCAGCTCCTTAAGATCAGCAACGCACGTGCTCAGGCTGTGAAGATCCTGAATCATCTGGTCACATACAACACGGCACCGGTCCATGAAGATGCTCCTCTTAAGTTTCTGCAGTTTATTCAGCTCCTGCGCATGGCAAGCTCTGAGACTATTAATGCCATCTGGGCTGAGTTCAAGGCCAAACCAGCTTACAGACACTGGATCCTGGATGCTGTCCCCTCTATCGGAAGTTCAGTGGCTGTGAGATTCATCAAGGAGAAGTTTTTGGCTGGTGACATCACTATTTTTGAGGCTGCTCAGGCTCTGGTTGCCGCTGTGCATATGGTGGCTGCTGATCTGGAGACTGTCAAGCTTGTTGAAAGCCTGGCTTTCAACCACAAGATTCAGACACACCCAGTTCTACGTGAGCTCACCATGCTTGGTTATGGTACCATGGTTTCCAAATACTGTGTTGAACATCCCAACTGCCCCGCTGAACTTGTGAAGCCCATCCACGAACTTGCTGTTCAGGCTGTTGCTAATAGCAAATTTGAGGAACTCTCCATGGTTCTTAAAGCTCTGGGTAATGCTGGCCATCCTGCTAGCATTAAACCAATCACAAAGCTCCTGCCCGTGTTTGGAACTGCAGCTGCTGCTCTGCCCCTGAGAGTCCAGGCTGATGCAGTTTTGGCCCTGAGGAACATTGCTAAGAGGGAGCCTAGAATGGTCCAGGAAGTTGCTGTGCAGTTGTTCATGGACAAGGCTCTCCACCCAGAGCTCCGCATGCTTGCCTGCATTGTTCTGTTTGAGACAAAGCCCCCAATGGGCCTGGTGATTACTTTAGCTAGCATTCTGAAAACAGAGAAAAATATGCAGGTGGCTAGCTTCACCTACTCTCACATGATGTCCCTGACCAGGAGCACCGCCCCTGACTTTGCCTCAGTTGCTGCTGCCTGCAATGTTGCTGTCAAGATGCTCAGCAACAAATTTAGAAGATTGAGCTGCCACTTCAGTCAAGCCATCCACCTGGATGCCTATTCCAATCCCCTGAGGATTGGTGCTGCTGCCAGTGCTTTCTACATCAACGATGCTGCCACCCTTTTCCCCAGAACTGTCGTGGCCAAAGCTCGCACCTACTTTGCTGGAGCAGCTGCTGATGTTCTTGAGGTTGGAGTGAGAACTGAGGGAATCCAGGAGGCTCTTCTGAAATTACCCCCAGCTCCTGAAAATGCTGACAGGATCACCAAGATGAGGCGTGTCATTAAGGCTCTGTCTGACTGGAGGTCCCTAGCCACAAGCAAGCCCCTAGCCTCCATATATGTGAAGTTCTTTGGTCAGGAAATTGCCTTTGCCAACATCGACAAGTCCATCATCGATCAGGCACTTCAGCTTGCCAACAGTCCTTCTGCACACGCTTTGGGAAGAAATGCCTTGAAGGCACTGTTGGCTGGAGCAACTTTCCAGTATGTTAAGCCCCTGCTGGCTGCAGAGGTGCGTCGCATCTTCCCCACCGCTGTTGGTTTGCCCATGGAGCTCAGTTACTACACTGCTGCTGTCGCTAAAGCATACGTCAATGTCCGTGCCACTCTGACACCTGCTCTGCCTGAAACCTTCCATGCTGCCCAGCTATTGAAAACAAACATTGAGCTACACGCCGAAGTTAGACCAAGCATTGTCATGCATACATTTGCTGTGATGGGAGTGAACACTGCATTCATCCAGGCTGCTATTATGGCAAGAGCTAAGGTCCGCACAATTGTCCCTGCAAAATTTGCAGCACAGCTTGACATCGCTAATGGCAACTTCAAGTTTGAAGCTTTCCCTGTTTCCCCTCCTGAGCATATTGCTGCCGCACACATTGAGACCTTTGCTGTGGCAAGAAATGTGGAGGATGTCCCAGCCGAGAGAATAACTCCCTTGATTCCTGCCCAAGGAGTAGCAAGAAGCACACAGCAGTCCAGGGATAAGTTAACATCTATGATTGCAGATTCTGCTGCCTCTTTTGCTGGAAGTTTGTCAAGATCTTCCGAGATCCTCTATTCTGATTTGCCATCCAACTTCAAGCCCATCATTAAGGCAATTGTAGTCCATCTTGAGGAGACAATCTGTGTCGAAAGGCTTGGAGTCAAAGCATGCTTTGAATTTACCTCAGAGAGTGCTGCCTTCATCAGAAACACTcttttctacaacatgattggaaaGCATTCAGTCCTTATTTCTGTGAAACCATCAGCATCTGAACCCGCCATCGAGAGGCTGGAGTTTGAAGTGCAAGTTGGACCCAAGGCTGCAGAAAAGATTATCAAAGTCATCACCATGAACGAAGAGGAGGAAGCTCCCGAGGGAAAAACTGTACTGTTGAAGCTCAAGAAAATTCTGCTGCCTGATCTGAAGAACGGCACCAGAGCTTCCTCTAGTTCCAGCAGCTCTAGTTCCAGCAGCTCTCGCTCTAGTAGTTCCCGCTCTAGATCCAGAAAATCAGAGAGCAGCAGCTCTTCCAGCTCCTCCAGCTCTCGCATCTCCAAGCGTGACGGCCCCGACCAGCCTTACAACCCCAACGACCGCAAATTCAAAAAGAATCACAAGGACTCTCAATCCACCTCCAATGTCATCTCCAGAAGCAAGAGCAGTGCCTCTAGCTTCCATGCCATCTACAAGCAGGACAAATTCCTTGGCAATAAACTTGCCCCTATGGTGATCATCCTCTTCCGTTTAGTGAGAGCTGACCATAAGATAGAGGGATACCAGGTTACTGCTTACTTGAACAAAGCTACTTCCAGACTGCAGATCATTATGGCTGCCCTTGATGAGAACGACAACTGGAAACTGTGTGCTGATGGTGTTCTGCTCAGCAAACACAAAGTCACTGCCAAGATTGCTTGGGGGGCAGAGTGCAAGGATTATAACACCTTTATCACTGCTGAGACTGGTCTTGTTGGTCCAAGCCCTGCAGTTCGTCTGAGGTTGTCTTGGGACAAACTCCCCAAGGTTCCCAAGGCTGTTTGGCGCTATGTTAGGATCGTGTCTGAATTCATCCCTGGGTACATCCCATATTACCTGGCTGACTTGGTTCCAATGCAAAAAGACAAAAATAATGAGAAACAGATTCAATTCACTGTGGTTGCCACATCTGAAAGGACCCTGGATGTCATTCTGAAAACACCCAAGATGACACTGTATAAACTGGGTGTGAACCTCCCCTGTTCTCTGCCATTTGAGTCTATGACTGATCTTTCTCCCTTTGATGACAACATTGTTAACAAAATCCACTACTTGTTTTCTGAAGTCAACGCAGTTAAATGTAGCATGGTCAGAGACACATTGACAACATTTAACAACAAGAAGTACAAGATCAACATGCCTCTCTCCTGCTACCAAGTTTTGGCTCAGGATTGCACCACAGAGCTCAAATTCATGGTTCTGCTGAAGAAGGATCATGCATCTGAACAAAACCACATCAATGTGAAAATCTCTGACATCGATGTTGACCTGTACACTGAAGACCATGGTGTGATAGTGAAGGTCAATGAAATGGAAATTTCCAACGACAACCTCCCATACAAGGACCCCTCAGGTTCTATCAAGATCGATCGGAAGGGTAAAGGCGTGTCTCTCTATGCCCCAAGCCATGGTCTCCAAGAAGTCTACTTTGATAAGTACTCATGGAAGATTAAAGTTGTGGACTGGATGAAGGGACAGACCTGTGGACTCTGTGGAAAGGCTGATGGCGAAAACAGACAGGAGTACCGTACACCCAGTGGCCGCCTGACCAAGAGCTCAGTCAGCTTTGCCCATTCCTGGGTGCTTCCTTCTGATAGCTGCCGCGATGCGTCTGAATGTCTCATGAAGCTCGAGTCTGTGAAGCTGGAGAAGCAGGTGATTGTTGATGACAGGGAGTCCAAATGCTACTCTGTTGAGCCTGTGCTGCGCTGTCTGCCTGGATGCCTCCCAGTGAGGACCACCCCCATCACCATCGGTTTCCACTGCCTGCCCGTCGATTCCAACCTGAACCGCTCTGAAGGTCTGAGCAGCATCTATGAGAAGAGTGTGGACCTGATGGAGAAGGCAGAAGCCCATGTGGCCTGTCGCTGCTCTGAGCAGTGCATGTAGTGCTGTGGTGGAGCAGATACTGTAACTTTTATAACAGAAAATATGTAATTTCACATCACTGAGATGTAACCTACAACATTATTGACCACTCAAATTGTAATAAATCCAACTGTGCATTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2559188 lncRNA upstream 18212 43459123 ~ 43518012 (+) True G2238634
TU2559218 lncRNA upstream 39514 43496463 ~ 43496710 (+) True G2238664
TU2558644 lncRNA upstream 173374 43306410 ~ 43362850 (+) True G2238147
TU2558557 lncRNA upstream 339504 43194721 ~ 43196720 (+) False G2238067
TU2559259 lncRNA downstream 30730 43577301 ~ 43592677 (+) True G2238687
TU2559343 lncRNA downstream 168696 43715267 ~ 43743741 (+) True G2238748
TU2559859 lncRNA downstream 458344 44004915 ~ 44005214 (+) True G2239203
TU2559865 lncRNA downstream 465201 44011772 ~ 44012006 (+) True G2239209
TU2559891 lncRNA downstream 480806 44027377 ~ 44027711 (+) True G2239235
XM_021599790.2 mRNA upstream 122111 43401184 ~ 43414113 (+) False zranb2
XM_021599791.2 mRNA upstream 122111 43401184 ~ 43414113 (+) True zranb2
XM_021599788.2 mRNA upstream 218778 43303838 ~ 43317446 (+) True LOC110521855
XM_021599782.2 mRNA upstream 346472 43183333 ~ 43189752 (+) True LOC110521852
XM_021599777.2 mRNA upstream 409142 43104346 ~ 43127082 (+) False LOC110521849
XM_036969118.1 mRNA downstream 5079 43551650 ~ 43561525 (+) True LOC110519394
XM_036969106.1 mRNA downstream 20019 43566590 ~ 43576447 (+) False LOC110515334
XM_036969105.1 mRNA downstream 21492 43568063 ~ 43576447 (+) True LOC110515334
XM_036968809.1 mRNA downstream 34955 43581526 ~ 43591268 (+) False LOC110521861
XM_036968808.1 mRNA downstream 36429 43583000 ~ 43591268 (+) True LOC110521861
TU2559176 other upstream 70395 43440853 ~ 43465829 (+) True G2238623
TU2557776 other upstream 805773 42729852 ~ 42730451 (+) True G2237341
TU2557666 other upstream 983038 42550320 ~ 42553186 (+) False LOC110521840
TU2556385 other upstream 2150231 41385660 ~ 41385993 (+) True G2236045
TU2555824 other upstream 2415134 41102438 ~ 41121090 (+) False LOC110521828
TU2559225 other downstream 62010 43608581 ~ 43623303 (+) True G2238671
TU2560116 other downstream 853314 44399885 ~ 44427686 (+) True G2239435
TU2560209 other downstream 1009623 44556194 ~ 44563618 (+) False LOC110521895
TU2560208 other downstream 1009743 44556314 ~ 44563618 (+) True LOC110521895
TU2560216 other downstream 1028285 44574856 ~ 44575278 (+) True G2239510

Expression Profile