RNA id: XM_036968650.1


Basic Information

Item Value
RNA id XM_036968650.1
length 3502
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC110521874
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 44113767 ~ 44124283 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTAAGATGCGTGTGATCTTGTTTTATTGCGCTCATACGTTTCTCTTGATGTCAGCTAGTTGGGTATTCTCAATATTATCTCACTATAAGGATGTTGTGATATGTAAGTTTGGAGTTGGGCAATTCTATTGCATTACTAGTTGTTGATAAAATAGGTATTTCTGTCGGCCGAACTGACGGAGGCAAGAAGGCGGATGCACGGGTCTATTGAAAACAGCTTACGCCACGGAGGAGacaagaacagagaggagggtgCATAGGCTACACAAAATACTTTCCCTTTAAACAGGGGACACGGCGGcgggggatagatagagaggggagagggaagatatttaaaaaaataaataaaaggaagAAAGACAgcgagggtgggagggagagagaaatagaaaaaaagaaagatgtCATCCTCTCGTTTGAAAAGCCGAGGCGAAGGTTGGATTGCGGCCGATCAGGGACTCTCTAGCTAGGGACACGATTTTACGCAACACCGAGGCTTTGGAATCCACCACCGCTTTGGCCTCTCGGAGCTATCGAAATAAATAAATGACTCTTCCTCCACGCATTCACAAACAACTGCGGACTTATTATTACTTTTGATATATTTTTCCTTATTTTCAATAACCTAATTTATGCATCGATTTGAGAATATAATTTTTCCTTGGGCTATAATATAAATATACAATGTAAATTGCATTGTAAATGCATCATTAAAAGCATGCATCAACCATTTTGTCGCATTTTAGTCATGTTGCATCCTTTCGTCCCCACACCATATAACAACATTTTAGTTCAACATCATTACTGTCATATAATATTGGCATATAACTGACAGCCTTTCAAAATTGATCATTCATCTTCAATAATAATTGATTTTATTGAATGCACCGCGATTTAAACTTCCACACAGAAATATTCACCTTGTTGATATTTAAAACTGCAGAGAGGAACTAGGTAGGCTATTACAGCAGGTGGAGTGATTCATCAGTTGGCCCCAGCCTATGGTTGGTTGGCCCCGAGTCTCAGCGGGATATATATTTCTAGTTTTGACACCTGGAATAAAAGTATCTGACATCATCTTGCTTCAAAATGGATTCTTCTTGGAGTAATTTTCTCTTTCAgACTCCTCTCTCACAGACCCAGTCTGAGACAGCCCTCCAATCAGAGCTGCTTCCGGACATGACTGGCTCTGCCCAGAGCCCCCCTACAGAGCATATAGCCCCTCCCCCATCCACAGTGGACACAGCCGCCCTGAATGAAGAGCCATTACCTGGAAAAGCCTCAATCAACCCTTGttacagtttggaaatcaactttggagaGAAGGCCGTCTCCAAGCCTGGCCGGCCGACACACATCTGCAACACATGTAACAAGCAGTTTAAAAACAACTACAACCTCCGGCGCCATCAGTCGGTGCACACTGGCATCAAAATGAAGGACAGagcagccagagagagggaggatgagagcaagggaggaggaggacggcaaacaatccctctctccctcctccacctttctctgccctctcatcctcctcccgcAGAATCCCTCCCCCAACCCTCCCCACTTGGAAACCAGGAGGGCCAACCTGTTGCGGTGTCCATTGCCCCAGCTACCGTCACCATGGCTGCGCCCCAGGTGCTCcaagctgcagttgtggttgccgGGACAATGGTACAGAACCAGAACCTGGGGCCtcaacccaaccctagccccaaccAGGTGAGGAAGAACCATGCGTGTGAGGCCTGTGGGAAGGCCTTCCGAGACGTGTACCACCTGAACCGCCACCGGCTTTCCCACTCGGACGAAAAGCCCTACCACTGCCCCATCTGCCAGCAGCGCTTCAAGAGGAAAGACCGCATGAGCTACCATGTACGCTCACACCAAGGAGGAGTGGAGAAACCTTATGTCTGCCCCCACTGCGCCAAGGGATTCTCACGACCCGACCACCTCAACAGTCACGTCAGACAGGTGCACTCCACTGAGAGACCCTTCAAGTGCCCGACCTGCACGTCTGCCTTCGCCACGAGGGACCGTCTCCGTGCCCACCTGATTCGCCATGAGGAGAAGGTGCCGTGCCACATCTGTGGCAAGCTCCTCTCTGCCGCCTACATCACCGATCACATGAGGGTCCACAACCAATCACAGCACCATGCCTGCCACCTCTGCAACCGCAGCTTCACCACCCTCACCTACCTGCGTGTCCACGCTCAGAAACACCACGGCCAGGAGTGGAAGGAGAGCGGTGGGACACGGGGCATGTTCGGCGGGGCCGGTGCCGGCGGGGTGCTGCTGTGCCAACTGTGTGGGGTGCAGTGCAAGACACCCACCCAGCTACAGGGCCACATGGGCACCCACGCCGTCACCCAGGTCCAGGGCGAGCCCAGCAGTAGCCTCGCGGGGACCGGTACCATGGCTGTGGCCGTGTCTCTGTCAGGCAGCTCAACTGTGGGCCTGCTGGTCACTGACTGCTCCAGCATCGCCCCCCATTCTCTCAGCTAGCAGCCAGGCCCattggagggaagggggagaggggatggaggtagaggggtTTTGTGGAGACTGCAgtcaggagagaggagtggatgtggctctggagtgaagtttcccctaagtacagatgtaggatcagcttcccctcccccaatcctaaccttaaccattagtgggaaAACTGAACCAGGATCAGCATATACCCTCCAGTGGATATCTATGTATGTTATGAAGGCCAAAGTATGCTGCAAACCAGGTCCCCTTTGTATTTGATCCTATTTAAAATGTTGCTGTTGTTTATGCAACAGTCACTTTCTCAACTGCCATTGGTGGAcacgagagaggggaggaaaggagagaccaTGGAAtccctgttttttttctttcaattaaATTCTACTGAACGAAATATAAAGTTTTCTGGTGCAAAATGCCACTTTTCCATTCACACAGAACACAAACTCCCATAACAATGTTTGGGATTTTACAAATACATCGCCATTTATTTTCCTTGGAAATATTGATTATACAATATATGATCACCCAGACGCAGTATGAGCTGTGGTCCTACATTGGCTTTTAGCTTTTTCAAATGAACTGTCTCCAAGAAAGGACTGTTGCCTTTTCATCAGAAATATGTCATCACCATGTAACTTTACCCTATGACTGATAGACAGGTGGCATCAAATGGGTATTTATTTGTATATTTGGCCACTGAATGCTCATCTTTCTTTGCTTTTATGATCTTGTTATTACTCTGGATGCTCTGATTTTTTTATTCTCTCAAAAATGCATTGGTCTGGAAAGTATTTGTACTTTTGTGACACGTTTTTGTGAGACTGTATTCTTGAGACTGTATTCTTGACTGTTCATCTGTTGGTGTAGAATCTCCTCTGTTAACGTCACTGTATTAAAGCCGTAGTATGTATAACCTATATGCACTTTATCTGTGAACATGTATAGCATCTGATATCAGAGATGCAGTAGAATAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2559974 lncRNA upstream 3945 44109406 ~ 44109822 (+) True G2239314
TU2559972 lncRNA upstream 6373 44107109 ~ 44107394 (+) True G2239312
TU2559946 lncRNA upstream 12874 44098264 ~ 44100893 (+) True LOC110521011
TU2559936 lncRNA upstream 53952 44059590 ~ 44059815 (+) True G2239280
TU2559933 lncRNA upstream 55098 44058396 ~ 44058669 (+) True G2239277
TU2560006 lncRNA downstream 89193 44213476 ~ 44213805 (+) True G2239346
TU2560007 lncRNA downstream 90589 44214872 ~ 44215154 (+) True G2239347
TU2560010 lncRNA downstream 95183 44219466 ~ 44219671 (+) True G2239350
TU2560025 lncRNA downstream 117390 44241673 ~ 44242010 (+) True G2239363
TU2560027 lncRNA downstream 119034 44243317 ~ 44243526 (+) True G2239365
XM_036968767.1 mRNA upstream 12832 44062053 ~ 44100935 (+) False LOC110521011
XM_036968768.1 mRNA upstream 12832 44062053 ~ 44100935 (+) False LOC110521011
XR_005040911.1 mRNA upstream 202895 43905506 ~ 43910872 (+) False LOC118945797
XR_005040912.1 mRNA upstream 202895 43905906 ~ 43910872 (+) True LOC118945797
XM_036968953.1 mRNA upstream 268043 43838520 ~ 43845724 (+) False LOC110521871
XM_021599808.2 mRNA downstream 124 44124407 ~ 44145448 (+) True LOC110521876
XM_036968773.1 mRNA downstream 21762 44146045 ~ 44162689 (+) False LOC110521877
XM_036968772.1 mRNA downstream 21763 44146046 ~ 44162689 (+) False LOC110521877
XR_005040881.1 mRNA downstream 21763 44146046 ~ 44162689 (+) True LOC110521877
XM_021599811.2 mRNA downstream 45647 44169930 ~ 44196336 (+) False LOC110521878
TU2559225 other upstream 490464 43608581 ~ 43623303 (+) True G2238671
TU2559176 other upstream 647938 43440853 ~ 43465829 (+) True G2238623
TU2557776 other upstream 1383316 42729852 ~ 42730451 (+) True G2237341
TU2557666 other upstream 1560581 42550320 ~ 42553186 (+) False LOC110521840
TU2556385 other upstream 2727774 41385660 ~ 41385993 (+) True G2236045
TU2560116 other downstream 275602 44399885 ~ 44427686 (+) True G2239435
TU2560209 other downstream 431911 44556194 ~ 44563618 (+) False LOC110521895
TU2560208 other downstream 432031 44556314 ~ 44563618 (+) True LOC110521895
TU2560216 other downstream 450573 44574856 ~ 44575278 (+) True G2239510
TU2560687 other downstream 729418 44853701 ~ 44860336 (+) False G2239933

Expression Profile