RNA id: XM_021599816.2


Basic Information

Item Value
RNA id XM_021599816.2
length 2072
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC110521880
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 44221395 ~ 44231315 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgggatatgtacgtatggtcactgtggggatgatgagGTTGATGGATTTATTGATGAAGCAGGTGACTGagatggtatactcctcaatgccattggatgagtcccagaacatattccagtctgtgctgacAAAACAGTCATGTAGCATATCTGCTGACTTCACTAGGTCTGTCTGTTTAGTCTTTTTGTGTTTGGTCTTCTGTTCATAGGCCTACCTCTTTGATTAAGGGCTGAATGGTAAATTAGTTGAGTAGTTGAATCAGATGTTGTTGGGATGGACCAGGGTTGAGGGATCATGTTATAAAACTACTGATGCAGAGGAAATTATACAGGGTTGCACTGCCCCCTTGTGGCTCAACATAAACAAGACAGCAATTTCACCTCCCAAACAGCAGGTGGCgataaaacaacacacacacacacacacacacacacacttccgatTAACCCAACTACCAACAAACGAAGAGTAAAATCACAACATCAGCTGAGAGAGAGACGGGACATTATCCTGCAGTATTATATGTCTTTAAAATGACCAAACTTCAACTGTTGAATGCCTACCTGACAGAACGTTTAACGGTAGTGGTGCGGGAGATTCTGGACGTGGTTGGGGACACAGTGGCCGAGTACCGAGAAGAGACGGCTAGGacgaagagagagaatgaaagcgCTAAGAGAGAAAATGAAAGCCTTCGGCGACAGCTCCGGGACATCTTACTCTTGGCGGAGACAGACTGGCGATCCAccagcctttctctctctgggcagcagcagcagctttgTGAGCAAGAGTGGAGCTCCAGGCAGGAACAGGACCCAGAACCCCTTCAGCAGAGCCAGGTCAACAGACGAGGGCTACAGACACAGAGCCAGGTAGCGTTGGGTAAGGATGGGGGTCTCACAGGACCAAACCAGGGACACACTGAAACGGTCCGAGTAGAAGAgaagtccagtccagtcccaaaGACAGAGCACAACTCAGACCCAGAAGCCAAGGGTTTTGGAAACACCTCGTCCTTGGCACCATCTTTGTTCTCCTCCAATGCCCACTGTGCCACAACAACTGGAGCAGCCAACGCTGAAGTGCCAGTCcttaggacagagagaaagaggtccTCTCCCATCGACCCAATCCAGGGACGGATCAAAATGGAACCCAAGGAATGTGACGTCACAGTGAACCTTACCAACCATGAACCTCAATCCAGTTCAGGCTACACAGGTCTTCCTATAACACTACTACCCCACAACCATGAACTCTCAGGCGATGCTGGCTTCAAAGACCTTCCGGATATGGACATCTCAGAGCTCCATAACACACATGACCAGCAAACATATGAAACAGATCCTGGGTCCAAGGACCAGGTGTTGCCATATAACGAGAGTAACAACTTCACCCCCACCGACTACCAGGAGGGGCGCCCACACCGCTGCACCCGATGTGGGGAGAGTTTCAGCCAGGCGGccagcctccacctccacctccagtACAAGAAGCCCTACGCCTGTGACTGGTGCTGTAAGTCCTTCGCCCAGTCGGCTGACCTGCGGCGCCACCACCGCATCCACACGGGGGAGAGGCCCCACCGCTGCTCCTGGTGCTCCAAAAGCTTTACCCAGAGAGGCAACCTGAGACGACACCTGAGGATCCACACCGGTGAGAGACCCTACAGCTGCCCCTACTGCCACAGGACCTTCAGCGACGGAGACACCATGAAAAAGCACAAACGGACTCACTCTGGGGAGAAACCCTATCGCTGTGTCCAGTGTCCCAAGAGCTTCACTGTGGCCAGCGGCCTGCGGGTACACCTGAACACACACCAGACAGATGCAGGGCAGCTCATCACATGAGGTCAATGTGCTCCACCTTTTCAAACACCGGAGGACATGAAGGGATTGTGAAACGTTGAAGTGTTTTAGCCATAGGAATATTTCCTAAATATATTTATTGGAATTAATAAAAACAGTGCAGTAGAAAACAAATGGATAATGTCACCTTAGCTGATGTTTCCAGCTTGATtgaagagtgtgtgtttgtgaacatgAATTAAATCAGTCCGTCATTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2560010 lncRNA upstream 1724 44219466 ~ 44219671 (+) True G2239350
TU2560007 lncRNA upstream 6241 44214872 ~ 44215154 (+) True G2239347
TU2560006 lncRNA upstream 7590 44213476 ~ 44213805 (+) True G2239346
TU2559974 lncRNA upstream 111573 44109406 ~ 44109822 (+) True G2239314
TU2559972 lncRNA upstream 114001 44107109 ~ 44107394 (+) True G2239312
TU2560025 lncRNA downstream 10358 44241673 ~ 44242010 (+) True G2239363
TU2560027 lncRNA downstream 12002 44243317 ~ 44243526 (+) True G2239365
TU2560029 lncRNA downstream 13284 44244599 ~ 44244832 (+) True G2239367
TU2559953 lncRNA downstream 15588 44246903 ~ 44248418 (+) True LOC110521882
TU2560034 lncRNA downstream 22126 44253441 ~ 44255957 (+) True G2239372
XM_021599815.2 mRNA upstream 14925 44197377 ~ 44206470 (+) True LOC110521879
XM_021599811.2 mRNA upstream 25059 44169930 ~ 44196336 (+) False LOC110521878
XM_021599813.2 mRNA upstream 25059 44170413 ~ 44196336 (+) False LOC110521878
XM_021599810.2 mRNA upstream 25059 44170414 ~ 44196336 (+) True LOC110521878
XM_036968772.1 mRNA upstream 58706 44146046 ~ 44162689 (+) False LOC110521877
XM_021599817.2 mRNA downstream 244 44231559 ~ 44234933 (+) True LOC110521881
XR_002473228.2 mRNA downstream 15527 44246842 ~ 44248353 (+) False LOC110521882
XM_036969469.1 mRNA downstream 29830 44261145 ~ 44269206 (+) True LOC110521884
XR_005040988.1 mRNA downstream 41234 44272549 ~ 44287917 (+) False LOC110521885
XM_021599820.2 mRNA downstream 41234 44272549 ~ 44289275 (+) False LOC110521885
TU2559225 other upstream 598092 43608581 ~ 43623303 (+) True G2238671
TU2559176 other upstream 755566 43440853 ~ 43465829 (+) True G2238623
TU2557776 other upstream 1490944 42729852 ~ 42730451 (+) True G2237341
TU2557666 other upstream 1668209 42550320 ~ 42553186 (+) False LOC110521840
TU2556385 other upstream 2835402 41385660 ~ 41385993 (+) True G2236045
TU2560116 other downstream 168570 44399885 ~ 44427686 (+) True G2239435
TU2560209 other downstream 324879 44556194 ~ 44563618 (+) False LOC110521895
TU2560208 other downstream 324999 44556314 ~ 44563618 (+) True LOC110521895
TU2560216 other downstream 343541 44574856 ~ 44575278 (+) True G2239510
TU2560687 other downstream 622386 44853701 ~ 44860336 (+) False G2239933

Expression Profile