RNA id: XR_005040988.1


Basic Information

Item Value
RNA id XR_005040988.1
length 2446
RNA type mRNA
GC content 0.53
exon number 13
gene id LOC110521885
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 44272549 ~ 44289275 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agctcaatgactttcaacgtggcaccgtcataggatgcaacctttccaacaagtcagttcatcaaatttctgccctactagaacctccccggttaactgtaagtgctgttattgtggggTGGTAACTTATagaagcaacaacagctcagtcgcgaagtggtaggccgcacAAGCTCAGAACCGGGCCGCCGAGTGCTGAATCGCATAAAAATCTTatgttgcaacattcactacggagttccaaactgcctctggaattaACGTTTGCACAATGACTGTTATCTCACCACACCAGGGTCGGTTGAAGCCAATGATTTTTAACATCATTGGTTGAGGCTAGGAAAAATGCAACTATGTACTTTGACTATTTGCCAATGAAAAGACTTGTTTTTCTCGTATCTATTCAGTATTCAGTCACTGGTATCAGTTTCATTGTTGGTCGATTTCCAACGGAGGTGGTGTTGTAATAAGTCATGTGAGTAAGGTGCGGAAGTTGGATACAATTTCAACATGGCTGCGCCGCGATAAGGAAAGAAGAACCTAGCTGCGCCTCACAAAAACATAACGGTTTACCTTCGTCCGACCAGTTTTTCAGAGAGCATCAAGACATGTTGACGCTAGTGTTTAAGCTAATGGCATAACGTCCAAGAGCAGATCTGACATCAACACAGGACCCGAGACAGATAACCTCGTCTCATCACTGAGTTGACCAGCTACCAGCAGCTGTGATGTCTCTAGCTGACCCCACCTCTGACACCACGCCCTTCTTCTCTGATGACAGCGAGGCGGAAGGCTCAGAAGAGCCTGGTGCGGGGCCCAGCCAGCACCGGGAAGTGGAAGAGCCAGCCAGCGGCGTGTCCAGCATGAGATCGGTGTTCACTGTTATCGTCCTGTGTTTCATCAACCTGCTCAACTACATGGACAGGTTCACCGTGGCTGGTGTTCTGCCTGACATTGAGCAGTACTTTGGGATCAATGATGGGAAGTCGGGGCTGCTACAAACAGTCTTCATCTGCAGCTACATGGTCCTGGCTCCTGTCTTTGGTTACCTGGGTGACCGGTACAACAGGAAGGTGATCATGAGTGTGGGCATCGGCTTCTGGTCCGTGGTGACGCTTGCCAGCTCCTACATGCCCAGAGAATATTTCTGGCTCCTGTTGTTGACGCGTGGCCTCGTGGGGGTTGGGGAGGCCAGTTATTCCACTATCGCCCCAACCATCATCGCTGACCTGTACATCAAGGAGAGGAGGACGCAGATGCTCTCTGTCTTCTATTTCGCCATTCCAGTGGGCAGTGGTCTGGGCTACATCGTGGGGTCAAAGGTTGATGACATGGCAGGGGACTGGCATTGGGCCCTGCGGGTGACTCCTGCGTTAGGACTGGTAGCGGTGGTGTTGCTTCTGTTTGTGGTGAAAGAGCCGAAGAGGGGTGCTATCGAGGCCCGACCGGAGCACACCCTCCAAAGGACCAGCTGGCTGGGTGACATGAAGGCCCTTTGCAGAAACCCCAGCTTTGTGTTGTCTACGTTTGGCTTCACAGCAGTGGCCTTTGTGACTGGCTCCTTGGCACTCTGGGCCCCGGCCTTCCTCTTCAGAGCTGCTGTCTTCACCGGAGAAAGGCCCCCCTGCATTAAGGGGCCCTGCGACACCTCCGACAGCCTGTACTTTGGCATCATCACAGTTGTGTCGGGGATCCTGGGTGTGGCCAGTGGTGCAGAGGTCAGTAGGAGGCTGAGGTTGAGGACCCCAAAGGCTGACCCCCTGGTGTGTGCTCTAGGACTCCTGCTCTCAGCGCCCTTCCTCTACCTCGCCATCGTCTTCGCTCAGGCCAGCCCCACTGCCACCTACGTGTTTATCTTCCTGGGCGAGACCTTCCTGTCTATGAACTGGGCCATCGTAGCGGACATCCTGCTATACGTGGTGGTCCCTACGCGTCGCGCCACAGCTGAGGCCTTCCAGATCGTTCTCTCTCACCTGCTAGGAGATGCTGGGAGTCCTTATCTCATAGGCCTGGTGTCAGACTCTCTGAAGCAGACTGACTCGTACCTGTGGCAGTTCCGCTCCCTGCAGCTCTCCCTCCTCACGTGCACTTTTGTGGCAGTGGGGGGCGGGGCTTTCTTCCTGGCCACTGCCCTTTTCATCGAGAAGGACCGTCAACGTGCCGCAAACTACACACCCTCAGCAAtggcctggggaatagttacaggggatgaatgagccaattggaagctggggatgatttggTGGCCATGATTGTATGCGGGCCAGATTTGGGAATTGAGCCAGTATACCAGGGTTTACACCCTTACTCTTACAATGATGAACCAATTGTTGTACCGAAGAGCGGCAGGTCCACGAGGGTGCCAGTGTCCAGCGTTTTGATTTGAGATTAAAGGGACATTGGAGGCTCCTGTGGAATATGCTGCACCCTGATTGGTCCCTGTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2560016 lncRNA upstream 489 44271469 ~ 44272060 (+) True G2239354
TU2560034 lncRNA upstream 16592 44253441 ~ 44255957 (+) True G2239372
TU2559953 lncRNA upstream 24131 44246903 ~ 44248418 (+) True LOC110521882
TU2560029 lncRNA upstream 27717 44244599 ~ 44244832 (+) True G2239367
TU2560027 lncRNA upstream 29023 44243317 ~ 44243526 (+) True G2239365
TU2560081 lncRNA downstream 60988 44348905 ~ 44350200 (+) False G2239409
TU2560080 lncRNA downstream 61025 44348942 ~ 44350220 (+) True G2239409
TU2560086 lncRNA downstream 85128 44373045 ~ 44374669 (+) True G2239414
TU2560088 lncRNA downstream 89091 44377008 ~ 44378792 (+) True G2239416
TU2560140 lncRNA downstream 142492 44430409 ~ 44431709 (+) True LOC110521889
XM_036969469.1 mRNA upstream 3343 44261145 ~ 44269206 (+) True LOC110521884
XR_002473228.2 mRNA upstream 24196 44246842 ~ 44248353 (+) False LOC110521882
XM_021599817.2 mRNA upstream 37616 44231559 ~ 44234933 (+) True LOC110521881
XM_021599816.2 mRNA upstream 41234 44221395 ~ 44231315 (+) True LOC110521880
XM_021599815.2 mRNA upstream 66079 44197377 ~ 44206470 (+) True LOC110521879
XM_036969216.1 mRNA downstream 2519 44290436 ~ 44293436 (+) True lat
XM_036968740.1 mRNA downstream 132605 44420522 ~ 44431709 (+) False LOC110521889
XM_036968741.1 mRNA downstream 134575 44422492 ~ 44431709 (+) False LOC110521889
XR_002473229.2 mRNA downstream 136170 44424087 ~ 44431709 (+) False LOC110521889
XM_021599829.2 mRNA downstream 136177 44424094 ~ 44431709 (+) False LOC110521889
TU2559225 other upstream 649246 43608581 ~ 43623303 (+) True G2238671
TU2559176 other upstream 806720 43440853 ~ 43465829 (+) True G2238623
TU2557776 other upstream 1542098 42729852 ~ 42730451 (+) True G2237341
TU2557666 other upstream 1719363 42550320 ~ 42553186 (+) False LOC110521840
TU2556385 other upstream 2886556 41385660 ~ 41385993 (+) True G2236045
TU2560116 other downstream 111968 44399885 ~ 44427686 (+) True G2239435
TU2560209 other downstream 268277 44556194 ~ 44563618 (+) False LOC110521895
TU2560208 other downstream 268397 44556314 ~ 44563618 (+) True LOC110521895
TU2560216 other downstream 286939 44574856 ~ 44575278 (+) True G2239510
TU2560687 other downstream 565784 44853701 ~ 44860336 (+) False G2239933

Expression Profile