RNA id: XM_021599859.2


Basic Information

Item Value
RNA id XM_021599859.2
length 2433
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC110521908
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 44784210 ~ 44803525 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggagaggagggggagcaagagagaaaagagagcggcaacaacacagtcacatcTGGAAGTTATTGAGaagtggagagagtgagggagagagaaagagagagaactgtaTTGTGAATTGAAAAGAGGGAGAAAGGATAAACAAACTCTAGATGTTGAGATAGATAGACTTGTTAAATGTATCAACTGAGTTAAAGATTTACGGGAGGACAGAGTTTATCTAAAAGTTGACAAGAATTCTAcagtggacagagagaaaggaacagaggaaaagaaagagagagcgcaaGAAACTGTAATTCTATCCTAAGAACAATCCATACCAAGAGGGGAGAACGACAGAGAGGGAAAACTAATGTAGCTTTCTAATCTGGAGGACCGTCTAAAACAGAACAAAGTGGTCTGAATCAAAACGTATGTTATTGAGTTGAAATTTAATCAACTCAACAAAGGAGAAGTGTCCAGAGAACAAAAGAGGAGTCCCCTAGTCTGGAATTCTTCTACGCATTTGTCTTCCTATCAAGCCTGTGGAGTCAACCGtcagacagGATGTCAGCCTCTCGGAGGTGCCTGTGCTGCGTGAAATACCTCATGTTCGTCTTCAACCTCATCTTCTGGctgGGAGGGTGTGGCCTGTTTGGAGTGGGAGTGTGGCTATCATTCACCCAGTCCGAGTTCTCCTCCCTCCCGCTGTCTTTTCCCTCACTCTCTGCAGCAAACCTACTTCTGGTCGCTGGGGGCGTCACCATGGTGACAGGCTTCCTGGGTTGCCTTGGCGCCCTGAAGGAGCAGCGCTGCCTGCTGATGACGtTCTTTGTAATCCTTTTGCTCCTGGTGTTGACAGAGGTGactctaaccctggtcctccatatCTTTCACAACGAGCTGGACACGAAAGCTCAGGATGAGTTAAAGGAGGGGATGAAGAATTACTTGACAGATGAAGGACTGAAGAAGTCATGGGACAATGTGCAGAAAATGcCGTGTTATCAGAAGGCCAGACAGTGGCTCCTggacaacatcctctctgtcCTGGTGTTTGGAGTCTGCATTGGCATTGTCCAGATCCTGGCTCTGATTTTCTCCCTGCTGATGTACTGCCAGATCCTCCGTGCTGAGAAGTACCTGGACTGATCTGGGACTGGTCCTTCACAGACAGGAGAAGCTGAATGAGAGACTCCCTAGCTGCCACAGAGTTCATCTAACATTTCTTTAAGGTTTTCCTTCGGTTAGTTGAAAAATAACTTCTCCACGCCGATGTGGGAACTAAAAGAAAAGTGTTAGCTGGTGTGTTTTATACCAACTACTGGGGATGGTTTTTCAGAACATTAAATCCAGATCAAAATCAGcctttttgtgtgttcaattctGTTAAGTTTAATCAAATATATTTGAATGAGAACACATCACCCATTTGAAGGGTAATTTTCATCTGGATTGATGGTTCTTAGAACACAGCACTAAAAACCATGGGGCACATTCCAGGTCGTCTTCATTGCGGTCATGTTGCTCAGATCTCACAACGCCTGGTGAAGTGTAATTCAATTGGCTTTGAGAGATCTGATCATCTGGAATACAGCCCTTTACTTATCATGTATAAAATAAGGACATTATTTGTAACTATTGGGGACTACGTGCTACTTGTCACTTTCACTATTAGGCGATACTAATAATATTGTTTAGTTGTGAAAATATAAAGTGCTTGCCCTGATGTCCATGGACAAGCAGTGAGACTTGCCCCAAAGAAACACTTACACTATTCTGTTCAACTGCAGCATATTTTAAACAAAAGTCTAAACTATATGTTTTAAAGTGAGCCTTACCAaagcaaataaaatgtaaatacattGTAATTTGTATGCATGTGAAGTGGTAGTTGTTTTGTGAACTTCAGCATTTTGTAAAAAACACAAATGTATGACTCTGATTGTGAATGCTGTAATAGTTCAAACAACTTGTTTTCCATATGAGGTATGAGGTGTTGTCGGTATGATGTATGACTCTGAGTGTGAATGCTGTAATAGTTCAAACAACTTGTTTTCCATATGAGGTATGAGGTGTTGTCGGTATGATGTATGAAACAACTTGTTTTCCATATTGTGCGTATGAGGTGTTGTCGGTATGAATTCACTTCTCTTATAGTTAGAGACGAGCCTATGCTTTCATATACTTATTCAGTCCAATAGACAACTGAAGAGGTAATTGACTTGCAACAGGGTTCGTCATTCTAATGAAATATATATCACATATATAAATGGACTATGAAAGTATGCTATTTAATTATGATCTGCGGTCATAACACCAAGTAATGAAACCCAAACCAAACCAATGACTACACTGTACAGTGTTTTGTAAAACATGTCAATAGAAAAACTTTGCTAAGAAAATAATTGTACAAGTACACATGATTCTCAGACATAAATACAATTGTGACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2560671 lncRNA upstream 10701 44773266 ~ 44773509 (+) True G2239925
TU2560666 lncRNA upstream 18548 44765180 ~ 44765662 (+) True G2239920
TU2560607 lncRNA upstream 111634 44658885 ~ 44672576 (+) True G2239865
TU2560606 lncRNA upstream 124113 44659330 ~ 44660097 (+) True LOC118945806
TU2560274 lncRNA upstream 130536 44638533 ~ 44653674 (+) True LOC110521898
TU2560721 lncRNA downstream 19659 44823184 ~ 44823428 (+) True G2239950
TU2560724 lncRNA downstream 23437 44826962 ~ 44827187 (+) True G2239953
TU2560732 lncRNA downstream 27360 44830885 ~ 44835200 (+) True G2239956
TU2560742 lncRNA downstream 46356 44849881 ~ 44850130 (+) True G2239966
TU2560686 lncRNA downstream 49953 44853478 ~ 44860336 (+) False G2239933
XM_036969164.1 mRNA upstream 1127 44779950 ~ 44783083 (+) False LOC110521907
XM_036969165.1 mRNA upstream 1127 44779950 ~ 44783083 (+) False LOC110521907
XM_021599856.2 mRNA upstream 1127 44779956 ~ 44783083 (+) True LOC110521907
XM_021599855.2 mRNA upstream 5333 44776552 ~ 44778877 (+) True LOC110521906
XM_036968819.1 mRNA upstream 15893 44755114 ~ 44768317 (+) True LOC110521905
LOC110521014 mRNA downstream 34862 44838387 ~ 44848354 (+) True LOC110521014
XM_036968891.1 mRNA downstream 328235 45131760 ~ 45139316 (+) False LOC110521916
XM_021599876.2 mRNA downstream 328236 45131761 ~ 45139316 (+) False LOC110521916
XM_036968890.1 mRNA downstream 328236 45131761 ~ 45139316 (+) False LOC110521916
XM_036968892.1 mRNA downstream 328238 45131763 ~ 45139316 (+) True LOC110521916
TU2560216 other upstream 208932 44574856 ~ 44575278 (+) True G2239510
TU2560209 other upstream 220592 44556194 ~ 44563618 (+) False LOC110521895
TU2560208 other upstream 220592 44556314 ~ 44563618 (+) True LOC110521895
TU2560116 other upstream 356524 44399885 ~ 44427686 (+) True G2239435
TU2559225 other upstream 1160907 43608581 ~ 43623303 (+) True G2238671
TU2560687 other downstream 50176 44853701 ~ 44860336 (+) False G2239933
TU2560689 other downstream 50176 44853701 ~ 44860336 (+) False G2239933
TU2560690 other downstream 50176 44853701 ~ 44860336 (+) False G2239933
TU2560694 other downstream 50176 44853701 ~ 44858993 (+) False G2239933
TU2560979 other downstream 161245 44964770 ~ 44965537 (+) False G2240165

Expression Profile