RNA id: XM_036968891.1


Basic Information

Item Value
RNA id XM_036968891.1
length 2453
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110521916
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 45131760 ~ 45139316 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGAGATGCCTGCAACACGGATCCAATTACGAACTGTATTTTGCGTCAAAGGGTGGGGGCTCAAAGCTGTGCGTTTTAATACCACTATGAGTCTGCGTCCAGGACCACACGGAATTGAAATGGCGGAGACAACAGATAGAATGGAGGGGGAGAGCTCGGCCAAGCCAGCAGCAGAAGACATGACTTCTAAGGACTATTACTTTGACTCATACGCCCACTTCGGTATACATGAGGAGATGCTGAAAGATGAGGTGCGCACCCTGACCTACCGGAACTCAATGTTCCACAACAAGCACCTGTTCAAGGACAAGGTGGTGTTGGACGTGGGCAGTGGGACTGGAATCCTCTGCATGTTTGCAGCCAAAGCTGGTGCCAAGAAGGTCATAGGCATTGAGTGCAGCAGTATTTCTGACTATGCCGTGAAGATCGTCAAGGCCAACAAAATGGACCACATTGTGACCATCATCAAGgggaaggtggaggaggtggaccTTCCTGTAGAGGGAGTGGACATCATCATCTCTGAGTGGATGGGCTACTGCCTCTTCTACGAGTCCATGCTCAACACTGTCATCTACGCCAGGGACAAGTGGCTGAAACCAGAGGGCCTGATTTTCCCAGACAGGGCTACCCTGTATGTCACAGCCATTGAGGACAGGCAGTACAAGGACTATAAAATCCACTGTGAGAATTCCTCTAAATTTTGGGGGTGGGAGAACGTGTACGGCTTCGATATGTCCTGCATCAAGGAGGTGGCCATCAAGGAGCCCCTAGTGGACGTGGTGGACCCCAAACAGCTGGTCAGCAGCGCCTGCCTCATCAAGGAGGTGGACATCTACACAGTGAAGATCGACGACCTGTCCTTCACCTCGCCCTTCTGCCTGCAGGTGAAGAGGAATGATTACATTCACGCCCTCGTCACCTACTTCAACATCGAGTTCACTCGCTGTCACAAGAGGACGGGCTTCTCCACCAGTCCAGAGTCCCCCTACACCCACTGGAAGCAGACTGTATTCTACCTTGACGACTATCTGACTGTGAAGACTGGAGAGGAGATTTTCGGCAACATCAACATGAAGCCCAATGTCAAAAACAACAGGGACCTCGACTTCACAGTTGACATAGACTTCAAGGGTCAGCTCTGTGAGGTGTCCAAGACCTCAGAGTACAGAATGCGTTAGGTGCCCCCTTCTCCCACACCTTGTGTGTTTTGTGAAAGGGGGAGTGCTGAAGGAAGAGCAGCGGTCAGTGTGTGTCTATGATCACTTAATTCTCATCCTCCAAAACTAGTACTCTTAAGCAATATTTGAAATATTCTGTTTTGCTTTCTTGTAACGTTTAATCAGATGTTCTGAGGTTTAAAACAACCAGTGGAAAGACATGGCGACTCATTGTGCAATAGTcactgaaatagttttttttacatgtgcTTATGTCTTTACGTTCAGCTCGATCTTAGCCTGTGCTTAAACTCGAAGTGTACACACACGCTGACCCCCTCACCTGCCTGTACATAGTGTTATTGTTCAGTTATTTTGgcctttttttttctcttttttttttttttaaagtcctgGATCTTGTTGACTTggcagagcccccccccccattttcatAAGAAGTGCCTCCTGTGACTGGATTCTGTCCCCCCACCAGCCAATTAGATTGTCTATTGGGGGGATGTAAATCAGCCATTGGTGTATTTAAAAATTCAGATTGAGAGTAATTGGAGGAAATCCAATTACAATTGTAGCTGTGATATGACTATCATGACATGGAGCCTGCCTCAAGATGAGCTGAGTGGCCCCATGGATCATCATGTCTGATTGGGTAGGTCTGTGCTGATGATCTTGCACAAGACTGACCGTAAGCGGTTTGTTCTCATCCAGCAGGTGGGGGTGATGTAGTCTAACCATGAATCCGTTATAATTTCCCCCTCTTTCAGATTGGTCTTTGCTGAACCTGTTCTAGCAATCAGAATTCATAAGAACCCCCCTACTAAGAAAAGCAAATAAGTGTGTTTTGATTAGAGGAGTTTAGCCCTGTGTACCTTAGTGCTAGACCTGGATGGCTGGTTTATTGGGACCACAGCAAAGCGTCCACTCTTCCCAGTGCAGGAGTAAACGAGATTCCTCTACCCTGTTGTCATCGCCTGGATTCCGTAGCATTGGTTTAGCCGAACCCAGGGACCCTTGTTTGCCCTCTAGCGCAAAGTGCAGCACTTAAATCTGAAACGTGTGCCAATATAGCCAGGCCGCCAGCCAGGAGTGGCAGATGTCTACCTCTGAGATTGGTTATTACCAGTTGGCTATGCAGGGTGGACATGGGTCAGACCGGACTGTTTCATGTTATGTCTTTTTTGGCCTTGCTGCTTCATGCAGCTTGAGTGCGGACCCAACATacttttaaattttatttatcttttttttttaataaagtgAAATGGGAAACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2561057 lncRNA upstream 71457 45058017 ~ 45060303 (+) False G2240221
TU2561058 lncRNA upstream 71498 45058017 ~ 45060262 (+) True G2240221
TU2561022 lncRNA upstream 107197 45022323 ~ 45024563 (+) True G2240196
TU2560962 lncRNA upstream 179866 44950523 ~ 44951894 (+) True G2240159
TU2560957 lncRNA upstream 184858 44946672 ~ 44946902 (+) True G2240156
TU2561106 lncRNA downstream 3212 45142528 ~ 45142747 (+) True G2240268
TU2561107 lncRNA downstream 3744 45143060 ~ 45143267 (+) True G2240269
TU2561108 lncRNA downstream 5324 45144640 ~ 45144902 (+) True G2240270
TU2561110 lncRNA downstream 7710 45147026 ~ 45147543 (+) True G2240272
TU2561111 lncRNA downstream 9129 45148445 ~ 45148652 (+) True G2240273
LOC110521014 mRNA upstream 283406 44838387 ~ 44848354 (+) True LOC110521014
XM_021599857.2 mRNA upstream 328235 44784210 ~ 44803525 (+) False LOC110521908
XM_021599859.2 mRNA upstream 328235 44784210 ~ 44803525 (+) False LOC110521908
XM_021599858.2 mRNA upstream 328235 44784214 ~ 44803525 (+) True LOC110521908
XM_036969165.1 mRNA upstream 348677 44779950 ~ 44783083 (+) False LOC110521907
XM_021599877.2 mRNA downstream 11050 45150366 ~ 45170704 (+) True LOC110521917
XR_005041068.1 mRNA downstream 18214 45157530 ~ 45157608 (+) True LOC118945915
XM_021599878.2 mRNA downstream 166198 45305514 ~ 45307830 (+) True LOC110521918
XM_021599880.2 mRNA downstream 218536 45357852 ~ 45365287 (+) False LOC110521919
XM_021599879.2 mRNA downstream 218536 45357852 ~ 45365288 (+) False LOC110521919
TU2561056 other upstream 6050 45058017 ~ 45125710 (+) False G2240221
TU2560979 other upstream 166223 44964770 ~ 44965537 (+) False G2240165
TU2560980 other upstream 166223 44964878 ~ 44965537 (+) True G2240165
TU2560687 other upstream 271424 44853701 ~ 44860336 (+) False G2239933
TU2560689 other upstream 271424 44853701 ~ 44860336 (+) False G2239933
TU2562472 other downstream 1021888 46161204 ~ 46181932 (+) True LOC110521020

Expression Profile