RNA id: XM_021599877.2


Basic Information

Item Value
RNA id XM_021599877.2
length 3256
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110521917
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 45150366 ~ 45170704 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCGACAGTGTTGTCGCTTTACGTCATCCCGCCATTTTAAGTTGAGGACAAATATTTTTTCTGGCAAGAAGCTAACCAAGCTGAAGCTCAAGTATATTCAACTGTGGGGAAACATCTTGCGTTGAACAATTAGAGTGCACGCTCTTATTCCACGTTGCCTGATTCGGGCTCTCTGAGTTTTAAAGGGATTGAATGAAGAGTTAAGGTGAAAGATGACCCAGTTTTTACCCCCCAATCTGCTGGCCCTATTTGCACCGCGGGACCCCATACCATTTCTGACCCAGTTGGAGAAGCTTCCACATGAGAAACACCACAACCAACCATACTGTGGCATCGCTCCCTTCATCAGGCACTTTGAGGATCCCAGAGATGCCCCTCCCCCTACTAGGGCAGAAACTCGTGATGAGAGGTTGGAGAGAAAGAGGAGGGAGAAGATCGAGAGGAGGCAGACGGTTGTGGAGACAGAACTGAAACTCTGGGATCCACACAATGACCCCAATGCTCAGGGGGATGCCTTCAAGACCCTGTTTGTGGCTCGTGTTAATTATGACACAACGGAATCCAAGCTTCGCCGTGAGTTTGAGGTCTATGGACCCATCAAAAGGATCTACATAGTCTACAACAAGCGGTCAGGGAAGCCCAGAGGCTACGCCTTCATAGAGTACGAGCACGAGAGAGACATGCACTctgccTACAAGCATGCAGACGGGAAGAAGATCGACGGAAGGAGAGTGCTGGTGGATGTGGAGAGAGGCCGCACTGTGAAGGGATGGCATCCCCGCAGGCTAGGCGGTGGTCTTGgtgggacaaggagaggtgggGCTGACGTCAACATCAAGCACTCTGGAAGAGACGACACCTCACGTTATGATGACCATCCCCCAATTGGAGGGGAACGTGAGCGCGAACGTGGACCTGAGCCCAGAGGGGAACGCAGAGAGCGCAGCCGTGAGCGCGAACGGGGTGTGGAGAAAGAGCGCGGTGGCGAGAGACGACGGTCCCGGTCCCGGGAAAGACGCAGGCGCAGCTCCCGCTCCAGGGAGAGGGGTGACAGGGGTCTGGTCCAGGCTGGGCCCGCAGAGGAGAGTGTAGGGGGTGGCAgaaggagagaccgagagagggagagggggggaggagggccAGGGGGAGACAGTCATagcagggagaggagcagagacaaaggtgaaaggaagaggaggagccgCAGTCGAGAGCGCAAGCGAGACCGGGAGAGGGGCAAGGGTGGTGAAGGTGATGAGGGCTTGGTGCTAGGAGATGGTATgataggggagggaggagagaggatgcctgAAGAGCCTAGTGTGGgtgaggaagtgggagaggagcGCGGCGGGAGGGagcgggacagagacagggagcggGACCGTGACCGGAGGCGCAGCCACAGGGACAAGGACCGTGAGAGGGACCGTGAGAGGCACAGGGGCgacagggagaaagacagggagcataagagagacagggagcgggGTGGCGGGGAGCGCAGGGAGGACCGGCATGGCTCTCTCCTGCTCCCCTCGGCCGAGCAGAACGACGTGGGTAACGGGGATGAGGGCGACGCGCCGCCCCAGCCAGAAGAGAACAGCCAGGATGGGTTGATGATGGACCAAGAGTCGGTGCAATCGGGGGAGGGTTACGTTTCCAATGAGAACGGCTACAAGGTGGAGACCCAGGCAGAAGAGTATTAAGAGGGGCTTTGCCATCTTTACTAATTTCctttaaaaaatacatgtatCCAACACAAACTCACATACTCCTTCCCTGTTAGTGTGAAGGATATTGTAATGAGCTGCTGCCCTGTTAGAAACCACAACGGCGCTGTGTAGGCATAAGAAACAAACTGTCCGTTTTATAGGGTAAGTAGGGTTTTGTTTCTTCTGTATTTGAACCCCAAGGACGAGGTCCACACCACAATTATTTCAAACCCGTCCCTCGGTACCAAACTGAGAACGGTGCTCACTGTCCCTTAACATTCACGCTCTCCCCCAACCGGAACTTTAATCTCACATTCTGCTCTGTCAAGTACTTAATTGTCTGATTACAATCCCTTCACGAGCGAGGCAGAGATGGCGTAGTTAGGGTGAAATATTTGTTTCTCTTTTTCTTAATCTCAGTTGGTGTATTTTTCTTTATTCAACCAGGGTTTTATTTTTATTGGGGTTACGTTTTGGTTTTATTTAACATTTCCCCCCATGTGGTTTGTATGAGTCCATGTTTGTTAGATTCTTTTTTTTCCTTCATAATTTTGGAGCCTTCATGTTCCTTTTACTTTAAGTACAAACCTGAGAACATCTTACTCAACTGTCTGGACACATGTCTACCCTGAAGAAAATGTACAGCAacagctaggtttccattcaattggcgacagattttcatgcacaTATTCTTGAATCTGCCTAAAAACATGCGCATGTTTCCATCCTATTGACTTGGTGCAAATAAAAGGCTGTGTGATGTAGTGCAAATTAAAAGCATTTtgtggttaaattcccatgtatcAAAAATGAAAAACTAGTTAAATGGGtttcatcacattttcaactccaCTGATTGCGTTATAGTGAGTGTGCTCACTTTGGTATTGGCATGTGTGCTCTAACCAATAGCACGATCTGtgtgctgttggctagagcgcacataTTGCCTACATGACATCATATGgacaatattattttttttttttaacaaccaAGCATAGATTATCATGTCACCAGACGAAAACCCTAGATATTTATTGGTTAGTAGCATCAAGCTAATTACCTTGtgctttcaccaccctgtgaagttcacttatttcatctgtagtttAATGAACAGCATGCTTTCCCGACTAGTTGTTGTGGGAGGACCacatgactccaagtttacttcaatatgatggttattgtatcaatatttgcgcataaaagcATTTCCACTGTTTTTCTAATTAATTTTACTTACAATATTCTACTTTGTCtagtgtgttttttgttttgacaTTTGGATAATTTACCCCAAAAATGTCTATGGCCTGTCATTACTTTTTTGTATCCGATGTCCTTTACTCACATAAAGGTTGGCTGGAAACCTGGTTATTGAAAATGTTTGTGGGAGTAAGGAAATGTGTTGCAAAGTGCATGTCCAAGAGTTGGCAAATATTGCTCATTTTTATTCTGTAAAGCAAGACTGGGGAACCCTCAATGGAATTGTTCTGATTCTCCTGAAATAAAGTTTTGTTTTTAAACATTTA

Function

GO: NA

KEGG:

id description
K11093 SNRP70; U1 small nuclear ribonucleoprotein 70kDa

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2561111 lncRNA upstream 1714 45148445 ~ 45148652 (+) True G2240273
TU2561110 lncRNA upstream 2823 45147026 ~ 45147543 (+) True G2240272
TU2561108 lncRNA upstream 5464 45144640 ~ 45144902 (+) True G2240270
TU2561107 lncRNA upstream 7099 45143060 ~ 45143267 (+) True G2240269
TU2561106 lncRNA upstream 7619 45142528 ~ 45142747 (+) True G2240268
TU2561332 lncRNA downstream 59581 45230285 ~ 45321010 (+) True G2240456
TU2561479 lncRNA downstream 161841 45332545 ~ 45332769 (+) True G2240592
TU2561486 lncRNA downstream 165364 45336068 ~ 45336436 (+) True G2240599
TU2561492 lncRNA downstream 167268 45337972 ~ 45338187 (+) True G2240605
TU2561494 lncRNA downstream 167647 45338351 ~ 45338599 (+) True G2240607
XM_036968891.1 mRNA upstream 11050 45131760 ~ 45139316 (+) False LOC110521916
XM_021599876.2 mRNA upstream 11050 45131761 ~ 45139316 (+) False LOC110521916
XM_036968890.1 mRNA upstream 11050 45131761 ~ 45139316 (+) False LOC110521916
XM_036968892.1 mRNA upstream 11050 45131763 ~ 45139316 (+) True LOC110521916
LOC110521014 mRNA upstream 302012 44838387 ~ 44848354 (+) True LOC110521014
XM_021599878.2 mRNA downstream 134810 45305514 ~ 45307830 (+) True LOC110521918
XM_021599880.2 mRNA downstream 187148 45357852 ~ 45365287 (+) False LOC110521919
XM_021599879.2 mRNA downstream 187148 45357852 ~ 45365288 (+) False LOC110521919
XM_021599883.2 mRNA downstream 187174 45357878 ~ 45365287 (+) False LOC110521919
XM_021599882.2 mRNA downstream 187175 45357879 ~ 45365287 (+) True LOC110521919
TU2561056 other upstream 24656 45058017 ~ 45125710 (+) False G2240221
TU2560979 other upstream 184829 44964770 ~ 44965537 (+) False G2240165
TU2560980 other upstream 184829 44964878 ~ 44965537 (+) True G2240165
TU2560690 other upstream 290030 44853701 ~ 44860336 (+) False G2239933
TU2562472 other downstream 990500 46161204 ~ 46181932 (+) True LOC110521020

Expression Profile