RNA id: XM_021599878.2


Basic Information

Item Value
RNA id XM_021599878.2
length 2317
RNA type mRNA
GC content 0.48
exon number 1
gene id LOC110521918
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 45305514 ~ 45307830 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAGGGTGTGTCTAGGACCCATTTGGCCCACTTGGACAGAGATCTGTTTTGGCAGAACCCCCTTCTGCCTGTAGCCATTTCCTGTGATCCCCAGTGCTATTTCCCGCATCTTGACTACCACTCTGTCTGTTGAGTTGGAGCAGCGACTCTCTGGTGCCCCACTAGCTGAGTCTGGCACGGTTATGAGTGTGGTCGGGGCGCACAGCTACAGCATCGTGTCCTCGGAGGAAGAAGGCCTGCGTCTCGGTGCCATGCCTGCTGTCACAATGGGCAACGGCTTCGGCAACGGCAAGATCCACACGATGCGCCGCAAGTGCCGCAGTCGCTTCGTGAACAAGAATGGCCAGTGCAATGTGCGCTTCTCGCACATGGACGAGAAGTCGCAGCGCTACATGTCAGACATCTTCACCACATGTGTGGACATCCGCTGGCGCTGGATGTTCCTGATGTTCACACTGGTGTTTGTGGTGTCCTGGCTGGCATTCGGCCTGGCCTTCTGGGTCATCGCTTTGCTTCACGGGGATATGGACAACCCGGGTGGTGGAGACGATAACTTCAGCCCCTGCGTCCTGCAGGTCAACAGCTTCGTGGCCGCCTTCCTGTTCTCTGTGGAGACCCAGACCACCATTGGTTATGGCTTCCGCTGCGTGACGGAGGAGTGCCCCTCGGCTGTCTTCATGGTGGTCTTCCAGTCCATCTTCGGCTGCATCATCGACTCCTTCATGATCGGCGCCATCTTAGCCAAGATGGCGCGGCCTAAGAAGCGTGCAGAGACGCTGCTTTTCAGCAACAATGCAGTGATCGCCATGCGTGACGGGAAGCTGTGCCTTATGTGGAGGGTGGGCAACTTGAGGAAGAGCCACATGGTGGAGGCCCACGTCCGGGCCCAGCTCATCAAACCTCGCATCACCGAGGAGGGTGAGTACATCCCCCTGGACCAGATCGACATCAACGTAGGGTATGACATGGGCATCGACCGCATCTTCCTGGTCTCCCCGCTCACCATTGTGCACGAGATTGATGAGGAAAGCCCCCTGTTTGGCATCAGCAAGCAGGATCTAGAGTTGTCTGACTTTGAGATAGTGGTGATACTTGAAGGGATGGTGGAAGCCACAGCCATGACAGCGCAAGCTCGCAGCTCCTACCTGTCCTCAGAGATCCTGTGGGGTCACCGCTTTGAGCCTGTCGTCTTCGAGGAGAAGAGCCAGTACAAAGTGGATTACGCTCACTTCCACAAAACCTTTGAGGTGCCGTCCACCCCCCAGTGCAGTGCCAAGGACATGGCGGAGATAGAGGACGAGGACAAGGATCCTACACCCACCAACTCTTTCTGCTATGAGAATGAGCTGGCTTTTATCAGCCGGgacgaggaagaggatgaggaggggaagCAGGATATGGACAGGGTGCCAGAGCTAGAGAGACTGGAGGCCACCGTCGGCCTAGACCAGAGGTCATATCATAGAGAATCAGAGATATGACCTTAGACCTTTGACAATATTTTTCTTGTTACTCAGTTCTAGCCGGTTGTTTTCCATGTGAATACATGCAGAGTAATGCAAGTGCCATATAAAAACCATGACTTGTTAGCATCACGCTACAACCATAAGGAAAGAGGAAATCACTCTAGTCAGACTAGAAACAGCCAGGAGTGGAGACAGCAGTGCTGCTTCCTCATAGCATGGAATAACAGGAACGTTCATAAaaagacccctctctctctttaggaAAACTTGAAATATTTTGGTCATGAGATAGTTTGaggtttacttgatagctaccttcacaaatagctagctagaacaaagtgttaataagaaattcatttaaaaagattaaaagcaatacaaataagttATCCAGGAGCTTTATATAATGCAATATTCATTGTCTATTAGGAAATAATATCTtagctataaaaaaaaatatagagAGATTTCGTAGTAAAGTGTGTGAAGTATTTCCAACAGATCAAGAGGGTATTTTGGGGGATTCTTATAACGGCCCTGTATTGTAGTTTACGGAGTCAGTCAACGAGGGAGAGTGTGTTGGAAATAGAAACACTGGATACCTACTGATGTTTAGCTAAACATTTTCTATATGCACACCTGTAGTTTTAAAGGTGCTTTCCATAAATATTGCCTGCAGCTAATTAGCTATTTGAAAAATATATGAAACATAACCTTCACATTGGAAAAATACAGTGATTAAATGCATAAATGTGCATTGTGTATTTTGCATTTCTATGCCATTTGAATCACTTAGAAAGTAAACAATTTATATTATGAAAGTAGCTTTTGTTATATTACTGGgaac

Function

GO: NA

KEGG:

id description
K05330 KCNJN; potassium inwardly-rectifying channel subfamily J, other

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2561111 lncRNA upstream 156862 45148445 ~ 45148652 (+) True G2240273
TU2561110 lncRNA upstream 157971 45147026 ~ 45147543 (+) True G2240272
TU2561108 lncRNA upstream 160612 45144640 ~ 45144902 (+) True G2240270
TU2561107 lncRNA upstream 162247 45143060 ~ 45143267 (+) True G2240269
TU2561106 lncRNA upstream 162767 45142528 ~ 45142747 (+) True G2240268
TU2561479 lncRNA downstream 24715 45332545 ~ 45332769 (+) True G2240592
TU2561486 lncRNA downstream 28238 45336068 ~ 45336436 (+) True G2240599
TU2561492 lncRNA downstream 30142 45337972 ~ 45338187 (+) True G2240605
TU2561494 lncRNA downstream 30521 45338351 ~ 45338599 (+) True G2240607
TU2561507 lncRNA downstream 69088 45376918 ~ 45379570 (+) False LOC110521920
XM_021599877.2 mRNA upstream 134810 45150366 ~ 45170704 (+) True LOC110521917
XR_005041068.1 mRNA upstream 147906 45157530 ~ 45157608 (+) True LOC118945915
XM_036968891.1 mRNA upstream 166198 45131760 ~ 45139316 (+) False LOC110521916
XM_021599876.2 mRNA upstream 166198 45131761 ~ 45139316 (+) False LOC110521916
XM_036968890.1 mRNA upstream 166198 45131761 ~ 45139316 (+) False LOC110521916
XM_021599880.2 mRNA downstream 50022 45357852 ~ 45365287 (+) False LOC110521919
XM_021599879.2 mRNA downstream 50022 45357852 ~ 45365288 (+) False LOC110521919
XM_021599883.2 mRNA downstream 50048 45357878 ~ 45365287 (+) False LOC110521919
XM_021599882.2 mRNA downstream 50049 45357879 ~ 45365287 (+) True LOC110521919
XM_021599887.2 mRNA downstream 60866 45368696 ~ 45382880 (+) False LOC110521920
TU2561056 other upstream 179804 45058017 ~ 45125710 (+) False G2240221
TU2560979 other upstream 339977 44964770 ~ 44965537 (+) False G2240165
TU2560980 other upstream 339977 44964878 ~ 44965537 (+) True G2240165
TU2560690 other upstream 445178 44853701 ~ 44860336 (+) False G2239933
TU2562472 other downstream 853374 46161204 ~ 46181932 (+) True LOC110521020

Expression Profile