RNA id: XM_036969007.1


Basic Information

Item Value
RNA id XM_036969007.1
length 1930
RNA type mRNA
GC content 0.56
exon number 10
gene id LOC110521019
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 46062883 ~ 46088097 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaggacatcaaccacccgagccactgcctgttcaccccgctatcatccagaaggcgagggcCAGGAGTTGATCTACACTGCCATGCTGGCAAAGACCTTACCTCCAGTCTCACCTCTTGCCCGCTCACCAACGGTCGTCGACGGGGGGACCAGATTTAGCACATCACGTGTTAGACTCTAGAACTGGGGGTGGGCTTGCCCCACCGATGTTCCACACAACCATCTCCGGGGAACGGATCACTGCTGCCATCCATCGATGGAAATCGGGGAAAATTGTGAATGCTGAGCAGGCTAGTGAGGTTGGGGCCCGCCCTCAGTCTCCGCTCTTTGGCTAATGGATGGAATTGAGGTGAATGGAGCCCATTTCCAACGTTGAGGACCCCAACTCATCAGAGCGAGATGTGAAACGctggcCGAATGGACCAAAAAGGAAGAGAAAGAACAGCACATGTTCATTGAAGAGCATGTCTGcACTAAGCCTCTCTGTCCCAGGATACATCCCCAGCTACTTGGAGAAGGATGAGCCATGTGTGGTATGTGGAGACAAGGCCACCGGCTACCATTACCGCTGCATCACATGCGAGGGCTGCAAGGGTTTCTTCAGGCGAACTATCCAGAAGAACCTTCACCCGGCTTACTCCTGTAAGTACGATGGCTGCTGCATCATCGACAAGATCACAAGGAACCAGTGCCAACTGTGTCGCTTCAGGAAGTGCATCGCAGTTGGCATGGCTATGGACCtGGTGCTGGACGACTCTAAGCGGGTAGCCAAGCGGCGTCTGATTGAGGAGAAccgggagaagaggaagaaggacGAGATCGTGAAGACTCTACAGACCCGTCCGGAGCCCGACAGCTCGGAGTGGGAGCTGATCCGCCATGTGACAGAGGCCCACCACCACACCAACGCGCAGGGCTCCCACTGGAAACAGAAACGCAAGTTCCTGCCTGAGGACATAGGTCAGTCCCCCGGGGCTCCCACCCCAGACGGAGACAAGGTAGACCTGGAGGCCTTCAGCGAGTTCACCAAGATCATCACCCCCGCCATCACACGCGTCGTCGACTTTGCCAAAAAACTAACCATGTTCTCAGAGctgCCTTGTGAGGACCAGATCATCCTATTGAAAGGTTGCTGTATGGAGATCATGTCGCTTCGCGCCGCCGTGCGCTACGACCCAGAGAGCGAGACGCTTACCCTGAGCGGCGAGATGGCGGTGAAGAGGGAGCAGCTGAAGAATGGCGGGCTGGGCGTGGTGTCGGACGCCATCTTTGATTTGGGCAAGAGTCTGGCGCAGTTTAACCTGGACGACTCGGAGGTGGCCCTGCTGCAGGCTGTGCTCCTCATGAGCTCAGATCGCTCTGGCCTGACATCGGTAGTTAAGATCGAGAAGTGCCAGGAGACGTACCTGCTTGCCTTCGAGCACTACATCAACCACCGCAAGCACAACATTCCCCACTTCTGGCCCAAGCTGCTGATGAAGGTGACGGACCTGAGGATGATCGGGGCGTGCCACGCCAGCCGCTTCCTCCACATGAAGGTAGAGTGTCCCAACGAACTCTTCCCTCCGCTCTTCCTTGAGGTCTTCGAGGACCAGGAAGTATGAACTGACCCCTGACTTTTGACCTggaagagatagaagagagaggggggaaagtaAAGGAGTAACAATTGGCCTCTTTCCTCATTTTGTGAAACACAATATCACCACCAGCAACACCGATAGTCACCAAGAAAAAAGTCACAGAGAAAAACAAAAAGGCTTTCTTTTGCATAGCTGTTTTGGTGATTTGCACTTGGGGCTCTTGTGGCTGCTGGGCCCCACTTTGAGTATGGGGGTGGAGCCCCCCTCTAAAGTGGGGTTCTCTGGCTGTGGGGCCTCTCTCTGAGTTGGGGTTCTCTggctgcgcccccccccccccccccccccc

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0070324 thyroid hormone binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K05547 THRA, NR1A1; thyroid hormone receptor alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2562418 lncRNA upstream 9172 46052515 ~ 46053711 (+) True G2241428
TU2562388 lncRNA upstream 44345 46014296 ~ 46018538 (+) True G2241398
TU2562381 lncRNA upstream 50400 46004383 ~ 46012483 (+) True G2241393
TU2562380 lncRNA upstream 52949 46001753 ~ 46009934 (+) True G2241392
TU2562375 lncRNA upstream 57343 45997309 ~ 46005540 (+) True G2241387
TU2562461 lncRNA downstream 40749 46128846 ~ 46129104 (+) True G2241471
TU2562463 lncRNA downstream 43854 46131951 ~ 46132500 (+) True G2241473
TU2562360 lncRNA downstream 51843 46139940 ~ 46146852 (+) True LOC110521935
TU2562361 lncRNA downstream 63517 46151614 ~ 46152373 (+) True G2241373
TU2562362 lncRNA downstream 64554 46152651 ~ 46152958 (+) True G2241374
XM_021599907.2 mRNA upstream 82564 45935243 ~ 45980319 (+) False LOC110521932
XM_021599906.2 mRNA upstream 82564 45935244 ~ 45980319 (+) False LOC110521932
XM_021599908.2 mRNA upstream 83170 45935245 ~ 45979713 (+) True LOC110521932
XM_021599905.2 mRNA upstream 128939 45928279 ~ 45933944 (+) True LOC110521931
XM_021599902.2 mRNA upstream 200328 45844459 ~ 45862555 (+) True LOC110521928
XR_002473238.2 mRNA downstream 51841 46139938 ~ 46146858 (+) False LOC110521935
XM_036969312.1 mRNA downstream 65285 46153382 ~ 46157357 (+) True LOC118945812
XM_036968883.1 mRNA downstream 73075 46161172 ~ 46190655 (+) False LOC110521020
XM_036968884.1 mRNA downstream 73075 46161172 ~ 46190655 (+) False LOC110521020
XM_036968885.1 mRNA downstream 73075 46161172 ~ 46190655 (+) False LOC110521020
TU2561056 other upstream 937173 45058017 ~ 45125710 (+) False G2240221
TU2560979 other upstream 1097346 44964770 ~ 44965537 (+) False G2240165
TU2560980 other upstream 1097346 44964878 ~ 44965537 (+) True G2240165
TU2560690 other upstream 1202547 44853701 ~ 44860336 (+) False G2239933
TU2562472 other downstream 73107 46161204 ~ 46181932 (+) True LOC110521020

Expression Profile