RNA id: XM_036968884.1


Basic Information

Item Value
RNA id XM_036968884.1
length 8163
RNA type mRNA
GC content 0.46
exon number 19
gene id LOC110521020
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 46161172 ~ 46190655 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATCGgatgaggagaaggaagaggggagagagaaaaaataaaacgGTTTTGCGGCCAGAAGGGAGGCTATCCCGTAACGGATTGTGGATGCAAAGAACTTCGACAGACAAGCAGATATTTTTTGAATCGCTTCTGAAGCTACATCTTTCTGTACAAGGACACCGGTGAAGGATGAATCTTGAAACCAGCGGCGGCAGGAGCGCGAACGGGGATGCTGTGATATGTCCATAGacggcgagggagggagagagcaagggatagaagggaggagggaggagagtactACGCCAGCTAAATATTGTCATTTTTTGTAGAACCACGATTTATTACAACCATCCAATCGAGCATTTTACATAATAGAGAAAACGATTATTTCtcgaaataaaaatatattttggtctGAACAGAAACGCAAGGTGAAATTGTTGACAGACGTTGACTGGAGAATACAGATTGAAAGAAGTGTAGGCTAGTCCGAACGGGTGTGGATAGCAGGGTGGCTGTTTtgactctctgttcccctctattTCCTGATACCAGGCCCTGGGATAATCCGAAGAGTGCACCGGATATTGGGAAAACCACCCCTCTGAGGCTAAAACGGAATATTACTATTCATATAGCCTAAAGGGCGGAGCAGAGATAGTTTACATACCAAAATGGGATAacaagaggtggagggagactAAAATATGTTACGATAATAAAATTCTTTACAAATGCCATTAGTATGTTATTATAAGGATCACTGATGGCAGTAACGGGTGTAGGCTATGGGGTGCAGAATTGTGTGCAATCTAGCCGTTACATGGAGCCTATCTGATTCAATCATTTTTGATAGGCTATTGCAGCTCCTTACATCTATCTGCCTGTACTAATATTAACAATAGGACACATTTATTTCGTATACTGTTAATAATAATTGTAATTCATAATAACTGGCATCATTTTGGACTTCTCAAATATGCACCTGCCAATCTCCCTACGAATTTCTCTCTTCCACTTTCTAACATCCCATTATTTCATTCCTGTTTAGTTAATTCACGGTCGTTGATAATAAACTGGAGTTTACCGAATTTATATCACGGTAACCGCATAGAAAAAGGCAAGTGCATGGGAGTAGCCCAGCCTAGACGATAGGCCACGAAATTGTCATCACGACTACAAccgctctctccattcctccctgtGACAATATCGCTAGGCGTCTGTAATGCTATTACCGTGGAGCCGTTCTACACCGAGGACCGATAGCTATAAATTCCTATTGAAAACAACAGTGATTTGATCTCCTTATCATCATATAATTTCGCCTTCAACGCACGGACATCATGACAAGCAAGGAGCTGTCCGTAGGCCAGTCGGCCCAATACGTCGGGCCTTACCGGTTGGAGAAAACCCTTGGGAAGGGGCAGACAGgtttGGTGAAGCTGGGAGTCCACTGTATTACGGGACAGAAGGTGGCCATAAAGATTGTGAACCGAGAGAAGCTGTCTGAGTCTGTCCTTATGAAGgtggagagggagatagcTATTCTAAAACTAATAGAGCACCCTCATGTGCTGAAGCTGCATGATGTTTATGAGAATAACAAATACCTGTATCTGGTGTTGGAGCATGTTTCAGGAGGAGAGTTATTTGACTACCTGGTGAAGAAGGGCAGACTGACACCTAAAGAGGCCAGGAAGTTCTTCAGACAGATCATCTCAGCGCTGGACTTCTGCCACAGCCACTCTATATGtcatagAGACCTGAAGCCTGAGAACCTGCTCCTGGATGAGAAGAACAACATCCGCATCGCTGACTTTGGCATGGCCTCCCTACAGGTGGGGGACAGCCTGCTAGAGACCAGCTGTGGATCTCCTCACTATGCATGTCCAGAAGTTATCAGGGGGGAGAAGTATGATGGTCGCAGGGCAGATGTATGGAGCTGTGGCGTTATTCTCTTTGCACTGCTGGTGGGAGCTCTACCCTTTGACCATGACAACCTGCGCCAGCTCCTTGAGAAGGTGAAGAGTGGGGTGTTCCACATGCCCCACTTCATCCCCCCAGACTGCCAGGCCCTGCTCAAAGGAATGATTGAGGTCAACCCTGACAAGAGACTCACGCTAGAAGCAATACAAAAACACTCATGGTATCTTGGTGGTCGTAACGAGCCGTGTCCGGAGCAGCCTCCtcccaggcgtgtgtgtgtgaagaggatTGTGTCGCTGACAGAGCTGGACCCCGATGTACTGGACAGCATGCACTCTCTGGGCTGCTTCAGAGACCGGGGAAAACTGACCCAGGACCTGCAGTGTGAGGAAGACAACCAGGAGAAGATGATCTACTACCTCCTCTTGGACAGGAAAGAGCGTTACCCCAGCTGTGAGGACGAAGACCTGCCGCCCAGGAATGATATAGGTCTCCCAGCAGATCCCCCTAGGAAACGGGTGGACTCTCCCATGCTGACCCGTCATGGCCGGTGCCGGCCGGAGAGGAAGAGTCTGGAGGTGCTGAGTGTGACGGAGCAGGGCTCCCCCACACCCACGCGCAGGGCGCTAGACACCTCCGCACACAGCCAGAGGTCTCGTTCAGTCAGTGGAGCTTCAACAGGGCTCTCATCAAGTCCTCTCAGCAGTCCCAGGAGCCCAGTTTTcactttcagccaatcagaagtCACCTCCGCCTCCACCACCCACTCCAAAGACCCCAAACCAGGAAGTTCCACCACTCCCCGGCCGTCACAACGGACGACCGTGCCTGACCCCAAAACCCAGACTCTGCCCTCCAAAGGGCTCTCCGATCGCCCTCACCTCCAGTCCATGAAGTCACTACCTCTCCAAGCTCCCCCCTCTCCGTCCCCCTCacccatcctctcccccatccctcgcTTCTTTTTTTTCCCCGCCCCCTCCGTCTTTAAGTCAGTCACTAAGAACATCTATCCTAACTCTGCCCCTGTGCCACAGGTCACCCCTCAGGGGTCTCCACTCCCCACCCCCCTGGGCACCCCCGTCCACCACCCCCAGCACCCCCcgcccacccctccctcctcctcctcatcctcctcctcctcgcggGCGGAGGGAGGCGGCGGGGGTGTGGGCGGGGGCGGATCCCTCTCCCTAACCCCGCCCTCCAGCCCTGGAGGCAGCGGGGGGATGGCCGCCAGTAGCTCCGCCCACTGGAGGACACGTCTCAACTCCTTTAAGAACAACCTGCTGGGATCGCCACGCTTCCACCGACGCAAACTgcaggTTCCAACACCGGAGGACATGTCCAGTCTAACTCCAGAATCAAGCCCAGAGCTGGCCAAGAAGTCGTGGTTTGGGAACTTCATCAGCCTGGAAAAGGAGGAACAGATATTTGTTGTCATTAGAGACAAACCGCTTAGTTCCATCAAAGCTGATATAGTCCATGCCTTCTTGTCTATCCCGTCCCTGAGTCACAGCGTCGTCTCCCAGACCAGCTTCAGAGCAGAATATAAGTCCTCTGGTGGCCCCTCCGTCTTCCAGAAGCCTGTTAAGTTCCAGGTGGACATTGCCTtctctgagggagagagggacagagaaaaggAACGAGccgagagggaaggaaagagggaaaATGGCATCTACAGTGTGACTTTCACCCTCATATCAGGTCCAAGTCGCAGGTTCAAGAGAGTGGTGGAAACGATTCAAGCCCAGCTACTTAGTACTCATGATCAGCCATCTGTGCAGGCACTGGCTGATGAGAAGAATGGGCAGCTGACCTCGCGTCCGCCCAGCACCCCGACCCGGCAAAACTCCCGACGTTCGGAAGGAGGCGGGGACCGGGGCGAGAGGTGTGACCGTGGTGACGCAGGGATTGGGGGCAGTGGGAGCGTGCTTCAGAGGAGGAGCTCGGGCAAAGACAAGACCAGACTCCTTTCCTCCAACGGGACACAGTCCCAGCCCTGAGGGAACATTCTGGAAACAGACAACAGGataggacagatagagagagatgaccCTAGAGAACAACACAGACAAACCCCCTCAGactaccactatcaccactaccaccGTCACATCTACCAAACCACCTGACCCAGCAATCATCATCACAAACCACTGCTTCAACCTGAAACGGGCCCAACAAGATAGTTGGCCACCAAGATGGAAGAAAGAAAATAGCGGATGAGAGTAAATGTCACTCAGTGTGTCACTCGGTGTCACTCAGATTAGCTTCAGAACAGAAGACAAGATCAGAAAAATGTCTAATTGTACGTTTGAAGTACAACACATCATGCAACTGTCAACAACAATATGTAGCCAGTAAAATAAGCGGGCAGACTTATATGGGGAATGGCAGGCTCTGAATGGTTAAAggctaaaaaaaaatgttttgttaagTTATCTGGTCTACAACCAATAAGATGAAAACCATTGTGAAAATTCCGAAATAATATCAACAATTATAACAGTGTTTCCCAGTTGACGTGGATCCACTTTTAAGTTTTACCTAACATCGCTTTTTGGGACAGTGAGAGTGAAATATTACGGGTCAAGTCAATTCAGTGGATATCAAGGAAACAGACAGGTTGGGTCCTTTCACTGGATTCTCATTAACGATAAGTTACGAGAACAGAAACATGGTAGAATTTAAGATAATGATGAGGAAGACTGCATCAAAATCAGAATGAAGCGTCCAAATGCATCTTTGCATCCAAGTAGCTCCAAAGATGTCAATACAGCTATTTGAACAAAATAAAGACAAATATCTGTTTTTCTTTATAACTAAGCACCACAATTGTATGATTCCTAAAATGCAATTGAAACAAACTTATGAAAACCATCTTGCCTTTAAATGAGGATTAAGCAACAGATATCTCTACAGATATCACCCAAGTTGAAGAAAAATAACAGACGAGGCATGGAAGAAAGTCTCAACGCCCCCACTACAACTGACATCTGGAATATGTAGAGATTTCAAACAGATAATGGAACGATATAACTAGAATCATTAGAGTAATACTATGAATGGAACCCTCAGCAGATCCTCTGAATGATGAGCTCTGTTCACTTCAGTCCAATGGAAGATGAAGAAGATGTAGTTCACAGGAAGTTACCTTCATCGGTTGTTTATTCCAGGAGGACTGAACCAAGCACTCCACATACATTATTGTTTTCTACAGAAAACAAccaaccctccctcctccctcccttacaTTCACAATATGGCCGACATGGGGCACTGAATGATGCGGCTTTTGAAAAGGCCCTAAACTGACTTGTTCTGTTAAGAGAGCAGAGGGTGGTGAGGAGGTGGAAAAGCTCATTTCAAGAAACAAAAAGAGACTTTGACTTAAGgatgacagagagaaaaacattgAAACGGCTGCACACTCATTCCCAGGAGAGGAAAGGAACAGACCACACAAAAATAATGAAATCCATTTAGTTTTTTGTTTCCTTTCACCTTTTGTTTATGTGATTTGAGCACAAATGAGTTTGATGTTTGCCGCCAACAAAATGGAGATAACGCTAACCAAGTGAATGTCAAAAACAAACACTATTGtgacaatatttatttatttcattttatgtcgtagatttatttaatatttatttatgtatttatttgttgATTTATATATTGCAAAGAGGAAATGTAGTGGAAAGGGAAGATGCTGACAAAAATAGAGGGGAAAGTTCTGTTGGAATATTGGAACAGCATTGAAACTGACAAAATGGCTGCTGTAGTTGAAACCAGATTGAACCCTCTTTTCCAGAGCGAGTCAGAAAACAACCTCTTGTCCATTCATTCCTCAATGTTTTAGAAACCAATGCTGCAAAATTTCTTCCAGCTCTTTTTGATGTCTTTATTGTTGATTTGTCTTTGTTTGGTATAATGAAGATTTCCCATTTAAAGCAACAAAACAAAACTAATTTTAAGAAATGAACCAAGGATAGATTTGATGCTTTGGGAATTTCTGGGATGGCAAAAAATATGAAAATCTTCCATGAAGTAAATAAAAAATTATCTCATAGACATTTGAAAAAGCAGAGAGCAGGAAAGGGTAGGGATAGTAATCTCTAATTCCTTCTCTGTCATATTCTGCTAGAATGTTGTTACTTAAGCGTACAAAGATATGGACACACCACATAAAAACACTGACTGAGGGCCCAACACCACGTGCAGAACACAAGCAGTATTCACATACACACGGACCCTCCTGTTCtttcagagaaaaaaaaaactattataaATTTGACCTTAAAATTGGAATGCACTGTCCTAAAAGACACAAAACAAATAAAGTGGTTTCCCCCTACCATCCCTTCGCCCTTGGCCACTGCCatgcccccccaaccccttcaTTACGACCCCCCTCATACCCCTTCCCCTTGCACAGAGCACCAAAAGAAAACACAAGTTTCGTTCTAGTCGCTCCCCTAGTCCCTCCCTAGTCCCTCGTCGTCACCTTGTTGTTTCATGCCACTACCATTAAGCACCTATTATCAGTCTCACCCTGCCTCACCATTCCTTGGCTGTGACCACAGCACCAGTGACTAAGAATCACCGCTGCAAGTTATACCACGTCCCCATCAGCCATCATCACACTTCATATCAGTCGGAGTCAACACACTGCTACCGTAGGAAACAACTGCTTGTACAGCAAACAGGGCGATTATTGTAACTCTTTATTTATCATACTCTGTCTATAACAGCTGTACTGTATACTTAATTGGTGTGAATCGGCCATTTACCATGAAATACGAAAAGAGTGGGAGGCAGTCTTCCTCGATTTCCTTGCCTAGGGCTCGTCTCGCTCCCCTTCCCCACAGCAAAGAACATGGTTATTTATTGTTGACTTTAGTAGCTCACCTCTCATTGTAGCTCACACCCTTCACTCAAGGCCTTTTGGCAGGAATCATGTACCCATTTTCCTACTATCGTGACGAACCGTacgtactgtactgtgctgtcttGGATATTTTCCTTTCACATAGTCCTTTCCAGCATGGTTCCAGGAACTATTGTGAATGTGTAACCAGGCTAGCCGAGCTAGTCGCCAATGAAATGCTGCATGACACTACTCGAAAGCAATGTGGCCCCGTAGGTGATGATGACAGTGAATGTTTTTTTTACTGCATTAATATAGGTGGATCCAGCACCGTCCTGCACAGAATAGTAGTAGTAAGAGTTTGAATCGCCAGGAATTTGTTTGAGCGCCTTAAGATGATGCGTACGGAGGGAGGTACATGTCTGTTATATTTGCTCgacctgtcagtgtgtgtccccggtgtctgtgagattgtgtgtgcACGACTACTCAGAGCCCTCATCCTCCCCCACGCCACATtctaggtcagaggtcagggtcatTTGAATGGGAGATAGATGTGACACAAGACCCACGACCCCACAGTCTTTAATTTTCCATTACCCTGTGCTAAAAAACAGAGTTAGTGGGAGACCGTGTTACCCTTACCGTTTGTATAGGTGGGGTAGGCCTCCCTGCCCAGCTCTGTTGCTTCACGTTTAAAAGAGTTTGGCTTCTATTGGTTTCAATTGGCGTTGTTGAGGCCAGAGGGCCTGGACGTTGCTGTTACTGAGAGATTTGACACCCCGCCTTGCCTCGCCTGAAAACAAAAACTAGGGGAAATGCTTGCTGGAGACACAACTAGAGCGAAACCCTTAGACATTCTGTGTAAATAACCGTTCAAAGTAAACGATGGGATGAGGGGAGCTGTTTCAACCCCATTGTGGGTGAATCTTACTGCAACCACCCCAACTCCCTCCTTGCCCCCTTCCTACACCCTcatctcttccccctctatctcttcttaaacccccccaccctctcATCCAGATGAAAATACCTCAACCCAACCCCATCCTTATATAATCACACCCCTATCCATTGTATACAGTAAGTATGAAACCATATCTTGATTCTTTATTCACACTGTACTCACAATATGATTATTGTCATCATTATTGATCATTCCAAGATTGTAAAATTGTAATCCCCCCTTCATACACAGTAGAACAAAACAATTCGTAAATATTTAAAACAGTaatgtggggggaaaaaacatgATGAGGATGATTATATAAGAAATGTCTgtattatataaaaaaaaaatgaaagtgCACTATTATGATTATTATTGCCTGTGATAAATAAAGAACAATAAACTACATCAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2562362 lncRNA upstream 8214 46152651 ~ 46152958 (+) True G2241374
TU2562361 lncRNA upstream 8799 46151614 ~ 46152373 (+) True G2241373
TU2562360 lncRNA upstream 14320 46139940 ~ 46146852 (+) True LOC110521935
TU2562463 lncRNA upstream 28672 46131951 ~ 46132500 (+) True G2241473
TU2562461 lncRNA upstream 32068 46128846 ~ 46129104 (+) True G2241471
TU2562482 lncRNA downstream 5603 46196258 ~ 46240927 (+) True G2241489
TU2562529 lncRNA downstream 60610 46251265 ~ 46253095 (+) True G2241527
XM_036969312.1 mRNA upstream 3815 46153382 ~ 46157357 (+) True LOC118945812
XR_002473238.2 mRNA upstream 14314 46139938 ~ 46146858 (+) False LOC110521935
XM_036969007.1 mRNA upstream 73075 46062883 ~ 46088097 (+) True LOC110521019
XM_021599906.2 mRNA upstream 180853 45935244 ~ 45980319 (+) False LOC110521932
XM_021598412.2 mRNA downstream 53479 46244134 ~ 46245101 (+) False LOC110520961
XR_002473064.2 mRNA downstream 53479 46244134 ~ 46245101 (+) True LOC110520961
TU2561056 other upstream 1035462 45058017 ~ 45125710 (+) False G2240221
TU2560979 other upstream 1195635 44964770 ~ 44965537 (+) False G2240165
TU2560980 other upstream 1195635 44964878 ~ 44965537 (+) True G2240165
TU2560690 other upstream 1300836 44853701 ~ 44860336 (+) False G2239933

Expression Profile