RNA id: TU2504820


Basic Information

Item Value
RNA id TU2504820
length 238
lncRNA type intronic
GC content 0.50
exon number 2
gene id G2190079
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 150510 ~ 153123 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTGTCTGTTAGCTGCTAGTAAGCTAGCTTATGTGTAAGCTACTCGTctgctgctcgtcagctaggttgtgtgtcagctgctcgttatcaaggttgtgtgtcagctgctcgtcagctaggtctTGTGTCACCTCCTCGTCAGGTAGgttttgtgtcagctactcgtcagatgctcgtcagctaggtttgtCAGATTCTTGTCGGCTAGGTTGTCTGTTAGCTGCTAGTAAGCTAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2504818 lncRNA upstream 2534 143790 ~ 147976 (+) True G2190077
TU2504815 lncRNA upstream 34091 112657 ~ 116419 (+) True G2190074
TU2504821 lncRNA downstream 17765 170888 ~ 181982 (+) True G2190080
TU2504768 lncRNA downstream 208693 361816 ~ 362627 (+) True G2190050
TU2504949 lncRNA downstream 381698 534821 ~ 542502 (+) True G2190199
TU2504965 lncRNA downstream 405172 558295 ~ 558851 (+) True G2190209
TU2504968 lncRNA downstream 411351 564474 ~ 571140 (+) False G2190210
trnat-ugu-41 mRNA upstream 71536 78903 ~ 78974 (+) True trnat-ugu-41
XM_036969199.1 mRNA downstream 210320 363443 ~ 376929 (+) False cfap161
XM_036969198.1 mRNA downstream 210322 363445 ~ 376929 (+) False cfap161
XM_036969201.1 mRNA downstream 210326 363449 ~ 384254 (+) False cfap161
XM_036969200.1 mRNA downstream 210327 363450 ~ 384257 (+) True cfap161
XR_005040872.1 mRNA downstream 332749 485872 ~ 550049 (+) False bnip2
TU2504769 other downstream 207808 360931 ~ 362627 (+) False G2190050
TU2504955 other downstream 370411 523534 ~ 527466 (+) False G2190199
TU2505236 other downstream 456203 609326 ~ 616624 (+) False LOC110521136
TU2505239 other downstream 456203 609326 ~ 616624 (+) False LOC110521136
TU2505423 other downstream 729817 882940 ~ 884097 (+) False G2190529

Expression Profile