RNA id: TU2505247


Basic Information

Item Value
RNA id TU2505247
length 265
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G2190408
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 606526 ~ 606790 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgttaaggcaagggctgatttcaaggttttactgctaacctacaaagcattacatgggcttgctcctacctatctttccgatttggtcctgccgtacatacctacacgtacgctacggtcacaagacgcaggcctcctaattgtccctagaatttctaagcaaacagttggaggcagggctttctcctatagagctccatttttatggaatggtctgcctacccatgtgagagacgcagactcggtctcaacctttaagtcttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2505253 lncRNA upstream 20858 585458 ~ 585668 (+) True G2190413
TU2504972 lncRNA upstream 29908 576190 ~ 576618 (+) True G2190213
TU2504968 lncRNA upstream 35386 564474 ~ 571140 (+) False G2190210
TU2504969 lncRNA upstream 35386 566371 ~ 571140 (+) True G2190210
TU2504965 lncRNA upstream 47675 558295 ~ 558851 (+) True G2190209
TU2505208 lncRNA downstream 2536 609326 ~ 610685 (+) False LOC110521136
TU2505211 lncRNA downstream 2536 609326 ~ 610087 (+) False LOC110521136
TU2505224 lncRNA downstream 2536 609326 ~ 610685 (+) False LOC110521136
TU2505225 lncRNA downstream 2536 609326 ~ 610756 (+) False LOC110521136
TU2505231 lncRNA downstream 2536 609326 ~ 610087 (+) False LOC110521136
XM_036968714.1 mRNA upstream 49318 485873 ~ 557208 (+) True bnip2
XR_005040873.1 mRNA upstream 53262 485872 ~ 553264 (+) False bnip2
XR_005040871.1 mRNA upstream 56467 485872 ~ 550059 (+) False bnip2
XR_005040874.1 mRNA upstream 56467 485872 ~ 550059 (+) False bnip2
XR_005040875.1 mRNA upstream 56476 485872 ~ 550050 (+) False bnip2
XR_005040889.1 mRNA downstream 1776 608566 ~ 610267 (+) False LOC110521136
XM_036968645.1 mRNA downstream 88148 694938 ~ 782481 (+) True tbc1d2b
XM_036968769.1 mRNA downstream 183048 789838 ~ 835444 (+) False dapk2b
XR_005040880.1 mRNA downstream 183048 789838 ~ 835444 (+) True dapk2b
XM_036968558.1 mRNA downstream 401959 1008749 ~ 1028587 (+) True ca12
TU2504955 other upstream 79060 523534 ~ 527466 (+) False G2190199
TU2504769 other upstream 243899 360931 ~ 362627 (+) False G2190050
TU2505236 other downstream 2536 609326 ~ 616624 (+) False LOC110521136
TU2505239 other downstream 2536 609326 ~ 616624 (+) False LOC110521136
TU2505423 other downstream 276150 882940 ~ 884097 (+) False G2190529
TU2505851 other downstream 644876 1251666 ~ 1252289 (+) False G2190881
TU2505853 other downstream 644876 1251666 ~ 1252951 (+) True G2190881

Expression Profile