RNA id: TU2505294


Basic Information

Item Value
RNA id TU2505294
length 289
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id G2190449
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 687676 ~ 688188 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAggtaggtatcctagtggttagagtgtgggggaggcaggtatcctagtggttagagtgtaggggaggcaggtagcctagtggttagagtgtagagactgcaggtagcctagtggttagagtgtaggggaggcaggtatcctagtggttagagtgtaggggaggtaggtatcctagtggttagagtgcaggGGAGGTAGGTatcctagtagttagagtgtaggggaggcaggtagcctagtggttagagtgtagagactgcaggtatcctagtggttagactgtaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2505286 lncRNA upstream 18653 667991 ~ 669023 (+) True G2190441
TU2505283 lncRNA upstream 21848 665517 ~ 665828 (+) True G2190438
TU2505266 lncRNA upstream 36184 647500 ~ 651492 (+) True G2190424
TU2505269 lncRNA upstream 37209 649938 ~ 650467 (+) True G2190426
TU2505246 lncRNA upstream 50329 634972 ~ 637347 (+) True G2190407
TU2505300 lncRNA downstream 1247 689435 ~ 689659 (+) True G2190450
TU2505302 lncRNA downstream 1961 690149 ~ 690678 (+) True G2190452
TU2505317 lncRNA downstream 19748 707936 ~ 709607 (+) True G2190464
TU2505318 lncRNA downstream 33324 721512 ~ 725393 (+) True G2190465
TU2505335 lncRNA downstream 99329 787517 ~ 787966 (+) False G2190479
XR_005040889.1 mRNA upstream 77409 608566 ~ 610267 (+) False LOC110521136
XM_036968714.1 mRNA upstream 130468 485873 ~ 557208 (+) True bnip2
XR_005040873.1 mRNA upstream 134412 485872 ~ 553264 (+) False bnip2
XR_005040871.1 mRNA upstream 137617 485872 ~ 550059 (+) False bnip2
XM_036968645.1 mRNA downstream 6750 694938 ~ 782481 (+) True tbc1d2b
XM_036968769.1 mRNA downstream 101650 789838 ~ 835444 (+) False dapk2b
XR_005040880.1 mRNA downstream 101650 789838 ~ 835444 (+) True dapk2b
XM_036968558.1 mRNA downstream 320561 1008749 ~ 1028587 (+) True ca12
XM_036968918.1 mRNA downstream 387766 1075954 ~ 1123473 (+) False man2c1
TU2505236 other upstream 71052 609326 ~ 616624 (+) False LOC110521136
TU2505239 other upstream 71052 609326 ~ 616624 (+) False LOC110521136
TU2504955 other upstream 160210 523534 ~ 527466 (+) False G2190199
TU2504769 other upstream 325049 360931 ~ 362627 (+) False G2190050
TU2505423 other downstream 194752 882940 ~ 884097 (+) False G2190529
TU2505851 other downstream 563478 1251666 ~ 1252289 (+) False G2190881
TU2505853 other downstream 563478 1251666 ~ 1252951 (+) True G2190881
TU2506051 other downstream 993366 1681554 ~ 1682049 (+) True G2191047
TU2506803 other downstream 1558876 2247064 ~ 2247502 (+) True G2191616

Expression Profile