RNA id: TU2505302


Basic Information

Item Value
RNA id TU2505302
length 306
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G2190452
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 690149 ~ 690678 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAACCAGTGATCTACTGTAATACAGGTTATAAATAAGGGAAGGATGACGTCTCTGTTAACCAGTGATCTACTGTAATGGGGTTATAAATAAGGGAAGGATGACGTCTGTTAACCAGTGATCTACTGTAATACAGGTTATAAATAAGGGAAGGATGACGTCTGTTAACCAGTGATCTACGTAATACAGGTTATAAATAAGGGAAGGATGACGTCTCTGTTAACCAGTGATCTACTGTAATACAGGTTATAAATAAGGGAAGGATGACGTCTCTGTTAACCAGTGATCTACTGTAATGAGGTTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2505300 lncRNA upstream 490 689435 ~ 689659 (+) True G2190450
TU2505294 lncRNA upstream 1961 687676 ~ 688188 (+) False G2190449
TU2505295 lncRNA upstream 1961 687676 ~ 688188 (+) False G2190449
TU2505296 lncRNA upstream 1961 687676 ~ 688188 (+) False G2190449
TU2505298 lncRNA upstream 1961 687676 ~ 688188 (+) True G2190449
TU2505317 lncRNA downstream 17258 707936 ~ 709607 (+) True G2190464
TU2505318 lncRNA downstream 30834 721512 ~ 725393 (+) True G2190465
TU2505335 lncRNA downstream 96839 787517 ~ 787966 (+) False G2190479
TU2505336 lncRNA downstream 96839 787517 ~ 787966 (+) True G2190479
TU2505337 lncRNA downstream 97749 788427 ~ 788976 (+) False G2190480
XR_005040889.1 mRNA upstream 79882 608566 ~ 610267 (+) False LOC110521136
XM_036968714.1 mRNA upstream 132941 485873 ~ 557208 (+) True bnip2
XR_005040873.1 mRNA upstream 136885 485872 ~ 553264 (+) False bnip2
XR_005040871.1 mRNA upstream 140090 485872 ~ 550059 (+) False bnip2
XM_036968645.1 mRNA downstream 4260 694938 ~ 782481 (+) True tbc1d2b
XM_036968769.1 mRNA downstream 99160 789838 ~ 835444 (+) False dapk2b
XR_005040880.1 mRNA downstream 99160 789838 ~ 835444 (+) True dapk2b
XM_036968558.1 mRNA downstream 318071 1008749 ~ 1028587 (+) True ca12
XM_036968918.1 mRNA downstream 385276 1075954 ~ 1123473 (+) False man2c1
TU2505236 other upstream 73525 609326 ~ 616624 (+) False LOC110521136
TU2505239 other upstream 73525 609326 ~ 616624 (+) False LOC110521136
TU2504955 other upstream 162683 523534 ~ 527466 (+) False G2190199
TU2504769 other upstream 327522 360931 ~ 362627 (+) False G2190050
TU2505423 other downstream 192262 882940 ~ 884097 (+) False G2190529
TU2505851 other downstream 560988 1251666 ~ 1252289 (+) False G2190881
TU2505853 other downstream 560988 1251666 ~ 1252951 (+) True G2190881
TU2506051 other downstream 990876 1681554 ~ 1682049 (+) True G2191047
TU2506803 other downstream 1556386 2247064 ~ 2247502 (+) True G2191616

Expression Profile