RNA id: TU2505460


Basic Information

Item Value
RNA id TU2505460
length 1199
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G2190561
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 940682 ~ 941880 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGTTTTATCTTCAAAGCAAGTTAATCTAGTTACACCTGAACATGTTATAGTGGACAAGCTAACGAATGCCATTGTTACATAAGGCGCAGGCCTTAAAAAAAATGACAGCAGGCTAGATTTACTAAATGAACTTTTCGCGCTTTATGGAAGTGACGACACACGCAGGGATGAGACGCTATACACTTCGTCCAATTCTCCCTTGTGCCCATATAGGGTGAACTGGCGATAAACTGCCAGCCTGTATGTTCCGCAAACAAAATCATACGAAAAGTTATTCTCATAATGAGCACACCCCTAATTACTTGCTAGACATTTTACAATTTCGGGTGTCTTCATGAATTCGTATCGTTGTCAGATGGTCTGTTCGTAAATTCAACTGGCGCTCTGGCGAGGAGGATACTGACCTCAGTCAAGCACCCaaactaactggctaaagttTGTTAGCTttactagctacttccagacacaaataatACAACAGCCGGACCATTTTACTCCCCCCAGCTggtgttatgttatccagagagttggtgactaactgtgctgctggcaacaatttaatgacACTTTTTATTGTCGACATTTACGGACACCGACCATTGTCAACGGGTGTTGAGCTTTCCTAAAATCaacagttattctgtgctctgaaATGGGATTAGAGCACATTTATAAACCCACCTAAATTAATGTCCATTGAGAATGCACAACTAcaccatttagctaagctaagaaggacgtgaataatcaagtcaataaacgttgggtagttagatatCAGATTCGGAAAGTTTGATGTATtagtagccagctaacgttaggtagctaacataccggtacatactgctgtaatgatatgctatgcggTTCGTAAGAATTGCGtaactaacaaattgtcagccaacataacgtgcgACTTATTAGAAACgtaattactttattacattgctcaacattttcttaacatttgtcataattagttaaaacaTTGAATTTGTATCAGCTCTCGTCGGACGTCAGCTGCATTATTCTCCGCCATTTTATTCAAATATGAAAAAGTgtgtgaagccacgcccatttcctgatgaattgcattatgggccctaaaagcacaGAAATGGTGTCCATCCACTGTatgtatacttcgtattttggTGAATGTAGTACTACAtctgggaacttttggcataGTAACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2505459 lncRNA upstream 244 940116 ~ 940438 (+) True G2190560
TU2505426 lncRNA upstream 53907 885815 ~ 886775 (+) True G2190530
TU2505422 lncRNA upstream 56949 882940 ~ 883733 (+) False G2190529
TU2505424 lncRNA upstream 56949 882940 ~ 883733 (+) True G2190529
TU2505413 lncRNA upstream 66383 873406 ~ 874299 (+) False G2190524
TU2505461 lncRNA downstream 888 942768 ~ 943028 (+) True G2190562
TU2505687 lncRNA downstream 25081 966961 ~ 967686 (+) True G2190736
TU2505714 lncRNA downstream 79273 1021153 ~ 1022024 (+) True G2190762
TU2505699 lncRNA downstream 89779 1031659 ~ 1033412 (+) True G2190748
TU2505746 lncRNA downstream 103520 1045400 ~ 1045680 (+) True G2190790
XM_036968769.1 mRNA upstream 105238 789838 ~ 835444 (+) False dapk2b
XR_005040880.1 mRNA upstream 105238 789838 ~ 835444 (+) True dapk2b
XM_036968645.1 mRNA upstream 158201 694938 ~ 782481 (+) True tbc1d2b
XR_005040889.1 mRNA upstream 330415 608566 ~ 610267 (+) False LOC110521136
XM_036968714.1 mRNA upstream 383474 485873 ~ 557208 (+) True bnip2
XM_036968558.1 mRNA downstream 66869 1008749 ~ 1028587 (+) True ca12
XM_036968918.1 mRNA downstream 134074 1075954 ~ 1123473 (+) False man2c1
XR_005040906.1 mRNA downstream 134074 1075954 ~ 1123835 (+) False man2c1
XR_005040903.1 mRNA downstream 134074 1075954 ~ 1123836 (+) False man2c1
XR_005040904.1 mRNA downstream 134074 1075954 ~ 1123836 (+) False man2c1
TU2505423 other upstream 56585 882940 ~ 884097 (+) False G2190529
TU2505236 other upstream 324058 609326 ~ 616624 (+) False LOC110521136
TU2505239 other upstream 324058 609326 ~ 616624 (+) False LOC110521136
TU2504955 other upstream 413216 523534 ~ 527466 (+) False G2190199
TU2504769 other upstream 578055 360931 ~ 362627 (+) False G2190050
TU2505851 other downstream 309786 1251666 ~ 1252289 (+) False G2190881
TU2505853 other downstream 309786 1251666 ~ 1252951 (+) True G2190881
TU2506051 other downstream 739674 1681554 ~ 1682049 (+) True G2191047
TU2506803 other downstream 1305184 2247064 ~ 2247502 (+) True G2191616
TU2507289 other downstream 1818380 2760260 ~ 2762972 (+) True G2191994

Expression Profile