RNA id: TU2505687


Basic Information

Item Value
RNA id TU2505687
length 474
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G2190736
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 966961 ~ 967686 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcatcttcagatagctaggtggcccagtcatagtcagttcattcatcttcagatagctaggtggaccagtcatagtcagtacattcatcttcagatagctaggtggaccagtcatagtcagtacattcatcttcaaatagctaggtggaccagtcatagtcagtacattcatcttcagatagctaggtggaccagtcatagtcagtacattcatctccagatagctaggtggaccagtcatagtcagtacattcatctccagatagctaggtggaccagtcatagtcagtacattcatcttcagatagctaggtggaccagtcatagtcagtacattcacctccagatagctaggtggaccagtcatagtcagtacattcatctccagatagcttgGTGGGACAGCCACATATCACATTCATAGtcagtacatttttcctcaaagtagctatcagcaaagtcagagttAGTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2505461 lncRNA upstream 23933 942768 ~ 943028 (+) True G2190562
TU2505460 lncRNA upstream 25081 940682 ~ 941880 (+) True G2190561
TU2505459 lncRNA upstream 26523 940116 ~ 940438 (+) True G2190560
TU2505426 lncRNA upstream 80186 885815 ~ 886775 (+) True G2190530
TU2505422 lncRNA upstream 83228 882940 ~ 883733 (+) False G2190529
TU2505714 lncRNA downstream 53467 1021153 ~ 1022024 (+) True G2190762
TU2505699 lncRNA downstream 63973 1031659 ~ 1033412 (+) True G2190748
TU2505746 lncRNA downstream 77714 1045400 ~ 1045680 (+) True G2190790
TU2505750 lncRNA downstream 79773 1047459 ~ 1047832 (+) True G2190794
TU2505756 lncRNA downstream 83280 1050966 ~ 1051171 (+) True G2190799
XM_036968769.1 mRNA upstream 131517 789838 ~ 835444 (+) False dapk2b
XR_005040880.1 mRNA upstream 131517 789838 ~ 835444 (+) True dapk2b
XM_036968645.1 mRNA upstream 184480 694938 ~ 782481 (+) True tbc1d2b
XR_005040889.1 mRNA upstream 356694 608566 ~ 610267 (+) False LOC110521136
XM_036968714.1 mRNA upstream 409753 485873 ~ 557208 (+) True bnip2
XM_036968558.1 mRNA downstream 41063 1008749 ~ 1028587 (+) True ca12
XM_036968918.1 mRNA downstream 108268 1075954 ~ 1123473 (+) False man2c1
XR_005040906.1 mRNA downstream 108268 1075954 ~ 1123835 (+) False man2c1
XR_005040903.1 mRNA downstream 108268 1075954 ~ 1123836 (+) False man2c1
XR_005040904.1 mRNA downstream 108268 1075954 ~ 1123836 (+) False man2c1
TU2505423 other upstream 82864 882940 ~ 884097 (+) False G2190529
TU2505236 other upstream 350337 609326 ~ 616624 (+) False LOC110521136
TU2505239 other upstream 350337 609326 ~ 616624 (+) False LOC110521136
TU2504955 other upstream 439495 523534 ~ 527466 (+) False G2190199
TU2504769 other upstream 604334 360931 ~ 362627 (+) False G2190050
TU2505851 other downstream 283980 1251666 ~ 1252289 (+) False G2190881
TU2505853 other downstream 283980 1251666 ~ 1252951 (+) True G2190881
TU2506051 other downstream 713868 1681554 ~ 1682049 (+) True G2191047
TU2506803 other downstream 1279378 2247064 ~ 2247502 (+) True G2191616
TU2507289 other downstream 1792574 2760260 ~ 2762972 (+) True G2191994

Expression Profile