RNA id: TU2505778


Basic Information

Item Value
RNA id TU2505778
length 482
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G2190814
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 1154754 ~ 1155235 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggcagttagatttgggtcctgagctacaggcagttagagttgggtcctgagctacaggcagttagatttgggtcctgagctacaggcagttagagttGGGTTGTTGTTTTAGGAGGAAATGGAAGAAAAAAAGTGTCCGATCTTTGAGGGTTTTTAATATTTATTTCCTAGGTCATATCAATGCCCCCAATGCAAATcactgtatatgaaatacatATCCAAAGAAAAGGGAATTTGTGGAAAAAACAGAAGTGGGCAGAATTAAAGGCCAACATGTCCTGCAGGATTTTGGTGGAAGTTGAGGTCAGGTCCAATGTTGACTGTACACCAGAGGGAAAGAGGTTGGGCCTTTCTAGAAACGTTTTAGCAGAAGCTTTTTATCCAAAACGACTTAGTCTGAATAAATGTTTACgcatgggtggtcccgggaattaAACCCAATATCCTGCCGTTGCAATGCTGTACCAAAATGCATGAACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2505809 lncRNA upstream 1177 1153205 ~ 1153577 (+) True G2190841
TU2505801 lncRNA upstream 4859 1141656 ~ 1149895 (+) True G2190833
TU2505797 lncRNA upstream 19696 1134682 ~ 1135058 (+) True G2190831
TU2505796 lncRNA upstream 20310 1133283 ~ 1134444 (+) True G2190830
TU2505795 lncRNA upstream 21635 1132728 ~ 1133119 (+) True G2190829
TU2505777 lncRNA downstream 10503 1165738 ~ 1166871 (+) True G2190813
TU2505815 lncRNA downstream 28391 1183626 ~ 1185348 (+) True G2190847
TU2505816 lncRNA downstream 29146 1184381 ~ 1185652 (+) True G2190848
TU2505821 lncRNA downstream 34949 1190184 ~ 1191183 (+) True G2190853
TU2505844 lncRNA downstream 72375 1227610 ~ 1228239 (+) True G2190875
XM_036968917.1 mRNA upstream 18510 1075954 ~ 1136244 (+) True man2c1
XR_005040903.1 mRNA upstream 30918 1075954 ~ 1123836 (+) False man2c1
XR_005040904.1 mRNA upstream 30918 1075954 ~ 1123836 (+) False man2c1
XR_005040905.1 mRNA upstream 30918 1075954 ~ 1123836 (+) False man2c1
XR_005040906.1 mRNA upstream 30919 1075954 ~ 1123835 (+) False man2c1
XM_036969371.1 mRNA downstream 12756 1167991 ~ 1240748 (+) True sema7a
XM_021598571.2 mRNA downstream 124598 1279833 ~ 1284559 (+) True islr2
XM_036968541.1 mRNA downstream 570163 1725398 ~ 1755496 (+) False LOC110510428
XM_036968542.1 mRNA downstream 570164 1725399 ~ 1755496 (+) True LOC110510428
XR_005040858.1 mRNA downstream 592449 1747684 ~ 1749666 (+) True LOC118945762
TU2505423 other upstream 270657 882940 ~ 884097 (+) False G2190529
TU2505236 other upstream 538130 609326 ~ 616624 (+) False LOC110521136
TU2505239 other upstream 538130 609326 ~ 616624 (+) False LOC110521136
TU2504955 other upstream 627288 523534 ~ 527466 (+) False G2190199
TU2504769 other upstream 792127 360931 ~ 362627 (+) False G2190050
TU2505851 other downstream 96431 1251666 ~ 1252289 (+) False G2190881
TU2505853 other downstream 96431 1251666 ~ 1252951 (+) True G2190881
TU2506051 other downstream 526319 1681554 ~ 1682049 (+) True G2191047
TU2506803 other downstream 1091829 2247064 ~ 2247502 (+) True G2191616
TU2507289 other downstream 1605025 2760260 ~ 2762972 (+) True G2191994

Expression Profile