RNA id: TU2505815


Basic Information

Item Value
RNA id TU2505815
length 286
lncRNA type intronic
GC content 0.32
exon number 2
gene id G2190847
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 1183626 ~ 1185348 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acactatacacactatacacactatacactatacacactatacactatacacactatacactatacacactatacactatatacactatacacgctatacactatacacactatacactatacacactatacacactatacactatacactatacacactatacacactatacactatacacactatacactatacacactatacacactatatacactatacacactatatacactatacacactatacactatacacactatacacactgtacactatacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2505777 lncRNA upstream 16755 1165738 ~ 1166871 (+) True G2190813
TU2505778 lncRNA upstream 28391 1154754 ~ 1155235 (+) True G2190814
TU2505809 lncRNA upstream 30049 1153205 ~ 1153577 (+) True G2190841
TU2505801 lncRNA upstream 33731 1141656 ~ 1149895 (+) True G2190833
TU2505797 lncRNA upstream 48568 1134682 ~ 1135058 (+) True G2190831
TU2505821 lncRNA downstream 4836 1190184 ~ 1191183 (+) True G2190853
TU2505844 lncRNA downstream 42262 1227610 ~ 1228239 (+) True G2190875
TU2505846 lncRNA downstream 43350 1228698 ~ 1233550 (+) True G2190876
TU2505771 lncRNA downstream 58659 1244007 ~ 1245822 (+) True G2190807
TU2505861 lncRNA downstream 100060 1285408 ~ 1288020 (+) False G2190888
XM_036968917.1 mRNA upstream 47382 1075954 ~ 1136244 (+) True man2c1
XR_005040903.1 mRNA upstream 59790 1075954 ~ 1123836 (+) False man2c1
XR_005040904.1 mRNA upstream 59790 1075954 ~ 1123836 (+) False man2c1
XR_005040905.1 mRNA upstream 59790 1075954 ~ 1123836 (+) False man2c1
XR_005040906.1 mRNA upstream 59791 1075954 ~ 1123835 (+) False man2c1
XM_021598571.2 mRNA downstream 94485 1279833 ~ 1284559 (+) True islr2
XM_036968541.1 mRNA downstream 540050 1725398 ~ 1755496 (+) False LOC110510428
XM_036968542.1 mRNA downstream 540051 1725399 ~ 1755496 (+) True LOC110510428
XR_005040858.1 mRNA downstream 562336 1747684 ~ 1749666 (+) True LOC118945762
XM_036968545.1 mRNA downstream 604248 1789596 ~ 1841114 (+) True hacd3
TU2505423 other upstream 299529 882940 ~ 884097 (+) False G2190529
TU2505236 other upstream 567002 609326 ~ 616624 (+) False LOC110521136
TU2505239 other upstream 567002 609326 ~ 616624 (+) False LOC110521136
TU2504955 other upstream 656160 523534 ~ 527466 (+) False G2190199
TU2504769 other upstream 820999 360931 ~ 362627 (+) False G2190050
TU2505851 other downstream 66318 1251666 ~ 1252289 (+) False G2190881
TU2505853 other downstream 66318 1251666 ~ 1252951 (+) True G2190881
TU2506051 other downstream 496206 1681554 ~ 1682049 (+) True G2191047
TU2506803 other downstream 1061716 2247064 ~ 2247502 (+) True G2191616
TU2507289 other downstream 1574912 2760260 ~ 2762972 (+) True G2191994

Expression Profile