RNA id: TU2505816


Basic Information

Item Value
RNA id TU2505816
length 769
lncRNA type intronic
GC content 0.31
exon number 2
gene id G2190848
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 1184381 ~ 1185652 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cactatacacactatacacactatacactatacacactatacacactatacactatacacactatacactatacacactatacactatacacactatacacactatacactatatacactatacacactctacacactatacactatacacactatacacactatacactatacacactatacactatacacactatacactatacacactatacactatacacactatacacactatacactatacacactatacactatacacactatacacactatacactatatacactatacacactctacacactatacactatacacactatacacactatacactatacacactatacactatacacactatacactatacacactatacactatacacactatacacactatacactatacacactatacactatacacactatacactatacacactatacacactatacactatatacactatacacgctatacactatacacactatacactatacacactaaaCAATATACACACTAaacaatatacacactatacactatacacactttacactatacactatacacactatacactatacatactatacactatacacactatacacactatacactatacacactatacacactatacactatacacactatacactatacacactatacacactacactatacacactatacactatacacactatacactatacactatacacactatatacactatacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2505777 lncRNA upstream 17510 1165738 ~ 1166871 (+) True G2190813
TU2505778 lncRNA upstream 29146 1154754 ~ 1155235 (+) True G2190814
TU2505809 lncRNA upstream 30804 1153205 ~ 1153577 (+) True G2190841
TU2505801 lncRNA upstream 34486 1141656 ~ 1149895 (+) True G2190833
TU2505797 lncRNA upstream 49323 1134682 ~ 1135058 (+) True G2190831
TU2505821 lncRNA downstream 4532 1190184 ~ 1191183 (+) True G2190853
TU2505844 lncRNA downstream 41958 1227610 ~ 1228239 (+) True G2190875
TU2505846 lncRNA downstream 43046 1228698 ~ 1233550 (+) True G2190876
TU2505771 lncRNA downstream 58355 1244007 ~ 1245822 (+) True G2190807
TU2505861 lncRNA downstream 99756 1285408 ~ 1288020 (+) False G2190888
XM_036968917.1 mRNA upstream 48137 1075954 ~ 1136244 (+) True man2c1
XR_005040903.1 mRNA upstream 60545 1075954 ~ 1123836 (+) False man2c1
XR_005040904.1 mRNA upstream 60545 1075954 ~ 1123836 (+) False man2c1
XR_005040905.1 mRNA upstream 60545 1075954 ~ 1123836 (+) False man2c1
XR_005040906.1 mRNA upstream 60546 1075954 ~ 1123835 (+) False man2c1
XM_021598571.2 mRNA downstream 94181 1279833 ~ 1284559 (+) True islr2
XM_036968541.1 mRNA downstream 539746 1725398 ~ 1755496 (+) False LOC110510428
XM_036968542.1 mRNA downstream 539747 1725399 ~ 1755496 (+) True LOC110510428
XR_005040858.1 mRNA downstream 562032 1747684 ~ 1749666 (+) True LOC118945762
XM_036968545.1 mRNA downstream 603944 1789596 ~ 1841114 (+) True hacd3
TU2505423 other upstream 300284 882940 ~ 884097 (+) False G2190529
TU2505236 other upstream 567757 609326 ~ 616624 (+) False LOC110521136
TU2505239 other upstream 567757 609326 ~ 616624 (+) False LOC110521136
TU2504955 other upstream 656915 523534 ~ 527466 (+) False G2190199
TU2504769 other upstream 821754 360931 ~ 362627 (+) False G2190050
TU2505851 other downstream 66014 1251666 ~ 1252289 (+) False G2190881
TU2505853 other downstream 66014 1251666 ~ 1252951 (+) True G2190881
TU2506051 other downstream 495902 1681554 ~ 1682049 (+) True G2191047
TU2506803 other downstream 1061412 2247064 ~ 2247502 (+) True G2191616
TU2507289 other downstream 1574608 2760260 ~ 2762972 (+) True G2191994

Expression Profile