RNA id: TU2505861


Basic Information

Item Value
RNA id TU2505861
length 2518
lncRNA type antisense_over
GC content 0.45
exon number 3
gene id G2190888
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 1285408 ~ 1288020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTGAGTCACTGTCACTTTTGAAATGCAATATGGCTGCAACACACAGCGAGAATTAAGTAGACGATCCTGaacagcaacattttcacaaCTATAAATTGAGAAAAATAACAATCCCAAAAATAACGATCCAAAACAATATCAGCGGAATTATAGTAGAGTTATTTTATAAAAGGTACAAGGTGACCTACAGCAAAGAGTTCAAGCAAACAGTTTCATCTGTCTACGTTTTAATCGCCATTTCACACATTTTCAACATAGATATTATTTATTAGCCTGGAATCAGAACAGAATTGTACCGTTTTGGAACAATTCAGTTTGGCTTCCAGGGTACCATAGATATTTACACCAGTCAGTGTTAATTAATGAACCGTTTCTTTATAACCTTCCATTACAGAGGAGTCTGTATATTAATAAATAGTTACATTCTaaccacatacacatggtcaaaCTAGCCTGGATTCCAAGAGGACATGTTCTGTTTCCATTGGTGAAATGGAGTGTATCAGTTAGGCTTCCAGGCTATGGTCAGACAGGAGTTCAGTGCCACACGACCTTTCCCGCTAGACTAGAGATTCTGTACGGCCATCAGAGCCATGCAAACAAAGAGACagacaacaaaacacacatccatccaggTCGATCCCACGATGTAGCACACCCTTGGACCAGGGCtgataagtagtgcactatataggaactaAGGTGCCATTTAGACAGGTAGCCACTCAGAAGACAGACTTCCTGAGGCATTTGAGCTAGAAGGTCTATGACATTTAGATCTAATCCTTCCAttttcaaaaaaataataattcagaaataattgattgattgagtCAATGGGAAACTTGCATGAAAAAAAGAGGCAAGCAGTCAGATCAATGCATAGACATATAATACTACAGTTAtaatctgcCCAAGAGCCATCCATACACCAAGGCCATTCCAATTCAGTCAAatgaaattccaattccaattttCCCTCATTGAAAAGCAATAAGGAAATGTGTATTCTAAAAGATGCAGTATGAGCTCTGCCATTTCCTTGTTACTAAAAGGGACAAAACATGGTATCAgaccccagttagactagctgtctccatggtatcaGACCCCAGTTCGACGagctgtctccatggtatcagacccgcgttagactagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcagaccccagttagacgagctgtctccatggtatcaGACCCCAGTTCGACGagctgtctccatggtatcagacccgcgttagactagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcagaccccagttagacaagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcaGACCCCAGTTAGACGAGCTGTCTCCATGGCATCAGACCCCagtagactagctgtctccatggtatcagaccccagttagactagttgtctccatggtatcagaccccagttaaactagctgtctccatggtgtcagaccccagttagactagctgtctccatggtatcagaccccagttagacgagctgtctccatggtatcaGACCCCAGTTAGACTGGCTGTCTCAATGGTATCAGACCCCAGTTAGACTAGTTATCTCCATGGTATCAgaccccagttagactagctgtctccatggtatcagaccccagtaagactagctgtctccatggtatcagaccccagttagactagctgtctccatctgcgtcggctaatggggatcataATAAATCTaaaccatctaaaccactgtgaaatatctttAAGAAGCAAAAATCTTGTTTGaggctggtgtacaaaaccaaaacttaagaacgggaagcatagaaataccaCACAGAACAGAGCTACCACTTCTTAGACGGGCTTTCAATGCGAATGACAGATCTATGaaattctatgtgaatttggtcaggtcacccaaaTAGTTACATAATGCAGCTTTAAATTTCAGTTTGCTTCCTGAATtggaatggaattgaccccaagccTGAGGGACACATTCTCAGTTAGTCACTGCCTCCGTTTCCTTCCCTGCCTCCATGTTTCCTGCCTCCTTGTTTCCTGCCTCCTTCTTCATCCCCTCTTTTGCAGCCCAGTTGAGTGTTCCGTTGAAGAAGCTCTCGTTGCTCTGACGCTGGAAGTGCTTCCTGGAGCCCACCAGCGAGGGGTTGTTGACCAGGGTGTAGAGGAGCTGCCAGTGGCCCCGTGCCCGTTTAGAGATGGACACCTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2505771 lncRNA upstream 39586 1244007 ~ 1245822 (+) True G2190807
TU2505846 lncRNA upstream 51858 1228698 ~ 1233550 (+) True G2190876
TU2505844 lncRNA upstream 57169 1227610 ~ 1228239 (+) True G2190875
TU2505821 lncRNA upstream 94225 1190184 ~ 1191183 (+) True G2190853
TU2505816 lncRNA upstream 99756 1184381 ~ 1185652 (+) True G2190848
TU2505872 lncRNA downstream 17814 1305834 ~ 1314502 (+) True G2190894
TU2505890 lncRNA downstream 27525 1315545 ~ 1318812 (+) True G2190900
TU2505904 lncRNA downstream 63887 1351907 ~ 1353311 (+) True G2190914
TU2505932 lncRNA downstream 118212 1406232 ~ 1408487 (+) False G2190938
TU2505930 lncRNA downstream 119078 1407098 ~ 1407873 (+) True G2190938
XM_021598571.2 mRNA upstream 849 1279833 ~ 1284559 (+) True islr2
XM_036969371.1 mRNA upstream 44660 1167991 ~ 1240748 (+) True sema7a
XM_036968917.1 mRNA upstream 149164 1075954 ~ 1136244 (+) True man2c1
XR_005040903.1 mRNA upstream 161572 1075954 ~ 1123836 (+) False man2c1
XM_036968541.1 mRNA downstream 437378 1725398 ~ 1755496 (+) False LOC110510428
XM_036968542.1 mRNA downstream 437379 1725399 ~ 1755496 (+) True LOC110510428
XR_005040858.1 mRNA downstream 459664 1747684 ~ 1749666 (+) True LOC118945762
XM_036968545.1 mRNA downstream 501576 1789596 ~ 1841114 (+) True hacd3
XM_036969491.1 mRNA downstream 691215 1979235 ~ 2008439 (+) True LOC118945831
TU2505853 other upstream 32457 1251666 ~ 1252951 (+) True G2190881
TU2505851 other upstream 33119 1251666 ~ 1252289 (+) False G2190881
TU2505423 other upstream 401311 882940 ~ 884097 (+) False G2190529
TU2505236 other upstream 668784 609326 ~ 616624 (+) False LOC110521136
TU2505239 other upstream 668784 609326 ~ 616624 (+) False LOC110521136
TU2506051 other downstream 393534 1681554 ~ 1682049 (+) True G2191047
TU2506803 other downstream 959044 2247064 ~ 2247502 (+) True G2191616
TU2507289 other downstream 1472240 2760260 ~ 2762972 (+) True G2191994
TU2507357 other downstream 1605215 2893235 ~ 2909182 (+) True smad3b
TU2507374 other downstream 1634881 2922901 ~ 2924465 (+) True G2192059

Expression Profile