RNA id: TCONS_00005364


Basic Information

Item Value
RNA id TCONS_00005364
length 887
lncRNA type retained_intron
GC content 0.40
exon number 2
gene id XLOC_002903
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 34737322 ~ 34871737 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCACCGGAATCCGCGCTCCGCGAGTGCTGCTGCTTCTGCCATCTGGAATAGCACTGTGTTTCAACATGCTGCAATACGAAGTGAATGGGACCCCAGCGAGTCAGCTGTCCACACCCCATTCTCCAAAGTCACCTAGTCCATCTCCAGCCAGCCCGGGGAGCTTAAAGAAACGCAGGGTAAGACGagattttctcttttcttttcttcttgcACCTGCTGTTTTTCTGTTGCATTTGAAATCACCTATTCCAGTTTGGTTTTGTCTTCTTTTACATATGGTGTGATTCTCCGCTTAGATAGCACATCCCTTTGCCCTCCGCCACTATCTCAGACTCTATATTTAACGCGCTCCTTCTATGTTCTCAGGAAATGGACAAGGCCATCATTGACAGCTCAGCTTAAACTTCCCCACTGGGCTAAGATCCACAGTCAGTGCTTAGTCTGGGACGCCACTTTTGGAGACTTTTATGTGCTCTTTCAATTTCATCATCAGAGTCCAATAGAGTTGTATATGGAGAATGAATCAAGACGTACTATTGAGGTTGGGTCCAAAATTCACTTTCGCTGTCAATCTGCTAGTGGTGAAAATTTGAGAAAGTTGGCAATTATTGTTTCTTACCCgtcataaaattatttttacactcttagtttttagaaaaaatattgatttttgtgcatttatattCGTGCAGATTTTTAGTGTTGTGGCAATATAAATTCTGtggcatccaaaaaaaaaaagacttgaaaGGGATAGTTTGGTCAAGATGTTTGACTTTCTTTGTTCTTCATATTTGAAAGAATGTTGAAAAGAGTTTGCCattgttgaatttattttttaatactatggatatcaatggaTAATAAAAACAAAGTCTTTAACCA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-124 Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to act upstream of or within intracellular signal transduction and protein phosphorylation. Orthologous to human DCLK1 (doublecortin like kinase 1).

Ensembl:

ensembl_id ENSDART00000146943

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006086 lncRNA downstream 569290 34196782 ~ 34198566 (-) True XLOC_002900
TCONS_00005339 lncRNA downstream 887492 33876131 ~ 33880364 (-) True XLOC_002891
TCONS_00006085 lncRNA downstream 1103067 33663165 ~ 33664789 (-) True XLOC_002890
TCONS_00005338 lncRNA downstream 1148914 33617624 ~ 33618942 (-) True XLOC_002889
TCONS_00006084 lncRNA downstream 1603283 33158589 ~ 33164573 (-) True XLOC_002877
TCONS_00006089 lncRNA upstream 98078 34870289 ~ 34871737 (-) True XLOC_002903
TCONS_00005367 lncRNA upstream 108437 34880648 ~ 34889020 (-) True XLOC_002904
TCONS_00005372 lncRNA upstream 178849 34951060 ~ 34959178 (-) False XLOC_002906
TCONS_00005373 lncRNA upstream 179020 34951231 ~ 34958024 (-) True XLOC_002906
TCONS_00005377 lncRNA upstream 193553 34965764 ~ 34969903 (-) False XLOC_002907
TCONS_00005359 mRNA downstream 26118 34737322 ~ 34741738 (-) False XLOC_002903
TCONS_00005356 mRNA downstream 524587 34220492 ~ 34243269 (-) False XLOC_002901
TCONS_00005357 mRNA downstream 524587 34240084 ~ 34243269 (-) True XLOC_002901
TCONS_00005354 mRNA downstream 544289 34171674 ~ 34223567 (-) True XLOC_002898
TCONS_00005366 mRNA upstream 99984 34872195 ~ 34889053 (-) False XLOC_002904
TCONS_00005368 mRNA upstream 117117 34889328 ~ 34907477 (-) False XLOC_002905
TCONS_00005369 mRNA upstream 133769 34905980 ~ 34916208 (-) False XLOC_002905
TCONS_00005370 mRNA upstream 136125 34908336 ~ 34915984 (-) False XLOC_002905
TCONS_00005371 mRNA upstream 139679 34911890 ~ 34915886 (-) True XLOC_002905
TCONS_00005358 other downstream 440462 34327262 ~ 34327394 (-) True XLOC_002902
TCONS_00005343 other downstream 734435 34032283 ~ 34033421 (-) True XLOC_002893
TCONS_00005331 other downstream 1390642 33377130 ~ 33377214 (-) True XLOC_002885
TCONS_00005330 other downstream 1390770 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005329 other downstream 1390915 33376818 ~ 33376941 (-) True XLOC_002883
TCONS_00005381 other upstream 212407 34984618 ~ 34992414 (-) False XLOC_002907
TCONS_00005403 other upstream 597626 35369837 ~ 35387242 (-) True XLOC_002918
TCONS_00005406 other upstream 848122 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005408 other upstream 882034 35654245 ~ 35654354 (-) True XLOC_002923
TCONS_00005410 other upstream 1390968 36163179 ~ 36163294 (-) True XLOC_002926

Expression Profile

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