RNA id: TU2506816


Basic Information

Item Value
RNA id TU2506816
length 212
lncRNA type intronic
GC content 0.44
exon number 1
gene id G2191626
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 2255730 ~ 2255941 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAtaacaatcacatcagatctgacccagacccataacaatcacatcagatctgaCCCAGACCCATAACAATCATATCAGATCCTACCCAGACCCATAACAATCACATCAGATCCTACCCAGACCCATAACAATCACATCAGATCCTACCCAGACCCATAACAATCACATCAGATCCTACCCAGACCCATAACAATCACATCAGATCCTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2506804 lncRNA upstream 7567 2247877 ~ 2248163 (+) True G2191617
TU2506798 lncRNA upstream 16423 2239047 ~ 2239307 (+) True G2191611
TU2506795 lncRNA upstream 17385 2238030 ~ 2238345 (+) True G2191608
TU2506794 lncRNA upstream 18248 2237274 ~ 2237482 (+) True G2191607
TU2506786 lncRNA upstream 26776 2228506 ~ 2228954 (+) True G2191599
TU2506821 lncRNA downstream 21293 2277234 ~ 2277433 (+) True G2191631
TU2506847 lncRNA downstream 73613 2329554 ~ 2329983 (+) True G2191653
TU2506865 lncRNA downstream 152434 2408375 ~ 2408651 (+) True G2191671
TU2506912 lncRNA downstream 247516 2503457 ~ 2582805 (+) True G2191707
TU2506923 lncRNA downstream 269605 2525546 ~ 2529220 (+) True LOC110521156
XM_036969491.1 mRNA upstream 247291 1979235 ~ 2008439 (+) True LOC118945831
XM_036968545.1 mRNA upstream 414616 1789596 ~ 1841114 (+) True hacd3
XM_036968541.1 mRNA upstream 500234 1725398 ~ 1755496 (+) False LOC110510428
XR_005040915.1 mRNA downstream 268752 2524693 ~ 2529356 (+) False LOC110521156
XR_005040914.1 mRNA downstream 269259 2525200 ~ 2529356 (+) False LOC110521156
XR_002473081.2 mRNA downstream 269261 2525202 ~ 2529356 (+) False LOC110521156
XM_036968830.1 mRNA downstream 280019 2535960 ~ 2575258 (+) False map2k1
XR_005040885.1 mRNA downstream 280019 2535960 ~ 2586498 (+) False map2k1
TU2506803 other upstream 8228 2247064 ~ 2247502 (+) True G2191616
TU2506051 other upstream 573681 1681554 ~ 1682049 (+) True G2191047
TU2505853 other upstream 1002779 1251666 ~ 1252951 (+) True G2190881
TU2505851 other upstream 1003441 1251666 ~ 1252289 (+) False G2190881
TU2505423 other upstream 1371633 882940 ~ 884097 (+) False G2190529
TU2507289 other downstream 504319 2760260 ~ 2762972 (+) True G2191994
TU2507357 other downstream 637294 2893235 ~ 2909182 (+) True smad3b
TU2507374 other downstream 666960 2922901 ~ 2924465 (+) True G2192059
TU2507365 other downstream 784479 3040420 ~ 3052452 (+) True iqch
TU2507745 other downstream 1528566 3784507 ~ 3785708 (+) False LOC110521165

Expression Profile