RNA id: TU2506912


Basic Information

Item Value
RNA id TU2506912
length 206
lncRNA type read_through
GC content 0.39
exon number 3
gene id G2191707
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 2503457 ~ 2582805 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAAGAGACAgggaggtgttgctgtatatattcagagccatatccctgtaatgtttataggggaggtgttgtatatattcagagtcatatccctgtaatgtttataggggaggtgttgtatatagtcagagccatatccctgtaatgtttataggggaggtgttgttgtatatattcagagccatatccctgtaatgtttataggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2506865 lncRNA upstream 94806 2408375 ~ 2408651 (+) True G2191671
TU2506847 lncRNA upstream 173474 2329554 ~ 2329983 (+) True G2191653
TU2506821 lncRNA upstream 226024 2277234 ~ 2277433 (+) True G2191631
TU2506816 lncRNA upstream 247516 2255730 ~ 2255941 (+) True G2191626
TU2506804 lncRNA upstream 255294 2247877 ~ 2248163 (+) True G2191617
TU2506932 lncRNA downstream 6407 2589212 ~ 2589629 (+) True G2191724
TU2506938 lncRNA downstream 10310 2593115 ~ 2594017 (+) True G2191725
TU2506967 lncRNA downstream 46203 2629008 ~ 2629646 (+) True G2191750
TU2506984 lncRNA downstream 49891 2632696 ~ 2633085 (+) False G2191761
TU2506987 lncRNA downstream 49891 2632696 ~ 2633085 (+) False G2191761
XM_036969491.1 mRNA upstream 495018 1979235 ~ 2008439 (+) True LOC118945831
XM_036968545.1 mRNA upstream 662343 1789596 ~ 1841114 (+) True hacd3
XM_036968541.1 mRNA upstream 747961 1725398 ~ 1755496 (+) False LOC110510428
XM_036968822.1 mRNA downstream 11637 2594442 ~ 2633145 (+) False zwilch
XM_036968824.1 mRNA downstream 11639 2594444 ~ 2623037 (+) False zwilch
XM_036968823.1 mRNA downstream 11643 2594448 ~ 2633284 (+) False zwilch
XM_036968821.1 mRNA downstream 11645 2594450 ~ 2633284 (+) True zwilch
XM_036968828.1 mRNA downstream 229088 2811893 ~ 2860702 (+) False smad6b
TU2506803 other upstream 255955 2247064 ~ 2247502 (+) True G2191616
TU2506051 other upstream 821408 1681554 ~ 1682049 (+) True G2191047
TU2505853 other upstream 1250506 1251666 ~ 1252951 (+) True G2190881
TU2505851 other upstream 1251168 1251666 ~ 1252289 (+) False G2190881
TU2505423 other upstream 1619360 882940 ~ 884097 (+) False G2190529
TU2507289 other downstream 177455 2760260 ~ 2762972 (+) True G2191994
TU2507357 other downstream 310430 2893235 ~ 2909182 (+) True smad3b
TU2507374 other downstream 340096 2922901 ~ 2924465 (+) True G2192059
TU2507365 other downstream 457615 3040420 ~ 3052452 (+) True iqch
TU2507745 other downstream 1201702 3784507 ~ 3785708 (+) False LOC110521165

Expression Profile