RNA id: TU2506988


Basic Information

Item Value
RNA id TU2506988
length 273
lncRNA type read_through
GC content 0.40
exon number 3
gene id G2191761
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 2632696 ~ 2633085 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgagGATACACACGGGGATGGTTTAGGGTAATATAGTATACACACTAGGATGGTTTAGGGTTAATATAGGATACACACTAGGATGGTTTAGGGTTAATATAGAGGGTTAATATAGGATACACACTAGGATGGTTTAGGGTTAATATAGGATACACACTAGGATGGTTTAGGGTTAATATAGAATACACACATCATATTCTAATtatgttctctctctctctctctctctctctctctctctcttcccccccaacctctctctctctcttcccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2506967 lncRNA upstream 3050 2629008 ~ 2629646 (+) True G2191750
TU2506938 lncRNA upstream 38679 2593115 ~ 2594017 (+) True G2191725
TU2506932 lncRNA upstream 43067 2589212 ~ 2589629 (+) True G2191724
TU2506955 lncRNA upstream 61752 2570127 ~ 2570944 (+) True G2191739
TU2506923 lncRNA upstream 103476 2525546 ~ 2529220 (+) True LOC110521156
TU2506995 lncRNA downstream 6419 2639504 ~ 2640154 (+) True G2191765
TU2506996 lncRNA downstream 7284 2640369 ~ 2643097 (+) True G2191766
TU2507001 lncRNA downstream 13088 2646173 ~ 2646390 (+) True G2191770
TU2507003 lncRNA downstream 17227 2650312 ~ 2651480 (+) False G2191772
TU2507004 lncRNA downstream 17793 2650878 ~ 2651480 (+) True G2191772
XM_036968824.1 mRNA upstream 9659 2594444 ~ 2623037 (+) False zwilch
XM_036968829.1 mRNA upstream 44842 2535960 ~ 2587854 (+) True map2k1
XR_005040885.1 mRNA upstream 46198 2535960 ~ 2586498 (+) False map2k1
XM_036968830.1 mRNA upstream 57438 2535960 ~ 2575258 (+) False map2k1
XR_002473081.2 mRNA upstream 103340 2525202 ~ 2529356 (+) False LOC110521156
XM_036968828.1 mRNA downstream 178808 2811893 ~ 2860702 (+) False smad6b
XM_036968827.1 mRNA downstream 178810 2811895 ~ 2860702 (+) True smad6b
XR_005040886.1 mRNA downstream 198928 2832013 ~ 2837148 (+) False LOC118945783
XR_005040887.1 mRNA downstream 198928 2832013 ~ 2837148 (+) False LOC118945783
XR_005040888.1 mRNA downstream 198928 2832013 ~ 2837148 (+) True LOC118945783
TU2506803 other upstream 385194 2247064 ~ 2247502 (+) True G2191616
TU2506051 other upstream 950647 1681554 ~ 1682049 (+) True G2191047
TU2505853 other upstream 1379745 1251666 ~ 1252951 (+) True G2190881
TU2505851 other upstream 1380407 1251666 ~ 1252289 (+) False G2190881
TU2505423 other upstream 1748599 882940 ~ 884097 (+) False G2190529
TU2507289 other downstream 127175 2760260 ~ 2762972 (+) True G2191994
TU2507357 other downstream 260150 2893235 ~ 2909182 (+) True smad3b
TU2507374 other downstream 289816 2922901 ~ 2924465 (+) True G2192059
TU2507365 other downstream 407335 3040420 ~ 3052452 (+) True iqch
TU2507745 other downstream 1151422 3784507 ~ 3785708 (+) False LOC110521165

Expression Profile