RNA id: TU2507288


Basic Information

Item Value
RNA id TU2507288
length 204
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G2191993
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 2758890 ~ 2759093 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctctctctctctctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctctctctctctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2507282 lncRNA upstream 15089 2743481 ~ 2743801 (+) True G2191987
TU2507266 lncRNA upstream 38247 2720386 ~ 2720643 (+) True G2191972
TU2507259 lncRNA upstream 42372 2716268 ~ 2716518 (+) True G2191965
TU2507008 lncRNA upstream 84296 2671855 ~ 2674594 (+) True G2191776
TU2507005 lncRNA upstream 106662 2651981 ~ 2652228 (+) True G2191773
TU2507290 lncRNA downstream 12813 2771906 ~ 2772195 (+) True G2191995
TU2507347 lncRNA downstream 115473 2874566 ~ 2874872 (+) True G2192047
TU2507349 lncRNA downstream 118090 2877183 ~ 2877665 (+) True G2192049
TU2507354 lncRNA downstream 159749 2918842 ~ 2920294 (+) False G2192054
TU2507355 lncRNA downstream 159749 2918842 ~ 2920294 (+) True G2192054
XM_036968823.1 mRNA upstream 125606 2594448 ~ 2633284 (+) False zwilch
XM_036968821.1 mRNA upstream 125606 2594450 ~ 2633284 (+) True zwilch
XM_036968822.1 mRNA upstream 125745 2594442 ~ 2633145 (+) False zwilch
XM_036968824.1 mRNA upstream 135853 2594444 ~ 2623037 (+) False zwilch
XM_036968829.1 mRNA upstream 171036 2535960 ~ 2587854 (+) True map2k1
XM_036968828.1 mRNA downstream 52800 2811893 ~ 2860702 (+) False smad6b
XM_036968827.1 mRNA downstream 52802 2811895 ~ 2860702 (+) True smad6b
XR_005040886.1 mRNA downstream 72920 2832013 ~ 2837148 (+) False LOC118945783
XR_005040887.1 mRNA downstream 72920 2832013 ~ 2837148 (+) False LOC118945783
XR_005040888.1 mRNA downstream 72920 2832013 ~ 2837148 (+) True LOC118945783
TU2506803 other upstream 511388 2247064 ~ 2247502 (+) True G2191616
TU2506051 other upstream 1076841 1681554 ~ 1682049 (+) True G2191047
TU2505853 other upstream 1505939 1251666 ~ 1252951 (+) True G2190881
TU2505851 other upstream 1506601 1251666 ~ 1252289 (+) False G2190881
TU2505423 other upstream 1874793 882940 ~ 884097 (+) False G2190529
TU2507289 other downstream 1167 2760260 ~ 2762972 (+) True G2191994
TU2507357 other downstream 134142 2893235 ~ 2909182 (+) True smad3b
TU2507374 other downstream 163808 2922901 ~ 2924465 (+) True G2192059
TU2507365 other downstream 281327 3040420 ~ 3052452 (+) True iqch
TU2507745 other downstream 1025414 3784507 ~ 3785708 (+) False LOC110521165

Expression Profile