RNA id: TU2507347


Basic Information

Item Value
RNA id TU2507347
length 307
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G2192047
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 2874566 ~ 2874872 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaataccacagtgtgtcatcacagcagcaagattcgtgacctgttgccacaagaaaagggcaaccagtgaagaacaaacaccattgtaaatacaacccatatttcatgcttatttattttcccttgtgtcctttaaccatttgtacattgttaaaacactgtatatatatataatatgacatttgtaatgtctttattattttgaaacttctgtgagtgtaatgtttactgtctgtccctgtctatccaataccttgtctgtccctgtctatccaataccctgtctgtccctgtctatccaatacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2507290 lncRNA upstream 102371 2771906 ~ 2772195 (+) True G2191995
TU2507288 lncRNA upstream 115473 2758890 ~ 2759093 (+) True G2191993
TU2507282 lncRNA upstream 130765 2743481 ~ 2743801 (+) True G2191987
TU2507266 lncRNA upstream 153923 2720386 ~ 2720643 (+) True G2191972
TU2507259 lncRNA upstream 158048 2716268 ~ 2716518 (+) True G2191965
TU2507349 lncRNA downstream 2311 2877183 ~ 2877665 (+) True G2192049
TU2507354 lncRNA downstream 43970 2918842 ~ 2920294 (+) False G2192054
TU2507355 lncRNA downstream 43970 2918842 ~ 2920294 (+) True G2192054
TU2507371 lncRNA downstream 48029 2922901 ~ 2924465 (+) False G2192059
TU2507387 lncRNA downstream 94208 2969080 ~ 2969652 (+) True G2192071
XM_036968828.1 mRNA upstream 13864 2811893 ~ 2860702 (+) False smad6b
XM_036968827.1 mRNA upstream 13864 2811895 ~ 2860702 (+) True smad6b
XR_005040886.1 mRNA upstream 37418 2832013 ~ 2837148 (+) False LOC118945783
XR_005040887.1 mRNA upstream 37418 2832013 ~ 2837148 (+) False LOC118945783
XR_005040888.1 mRNA upstream 37418 2832013 ~ 2837148 (+) True LOC118945783
XM_036968631.1 mRNA downstream 18062 2892934 ~ 2915974 (+) False smad3b
XM_036968629.1 mRNA downstream 66221 2941093 ~ 3052608 (+) False iqch
XM_036968627.1 mRNA downstream 66222 2941094 ~ 3052608 (+) False iqch
XM_036968630.1 mRNA downstream 66223 2941095 ~ 3052608 (+) False iqch
XM_036968628.1 mRNA downstream 66224 2941096 ~ 3052608 (+) False iqch
TU2507289 other upstream 111594 2760260 ~ 2762972 (+) True G2191994
TU2506803 other upstream 627064 2247064 ~ 2247502 (+) True G2191616
TU2506051 other upstream 1192517 1681554 ~ 1682049 (+) True G2191047
TU2505853 other upstream 1621615 1251666 ~ 1252951 (+) True G2190881
TU2505851 other upstream 1622277 1251666 ~ 1252289 (+) False G2190881
TU2507357 other downstream 18363 2893235 ~ 2909182 (+) True smad3b
TU2507374 other downstream 48029 2922901 ~ 2924465 (+) True G2192059
TU2507365 other downstream 165548 3040420 ~ 3052452 (+) True iqch
TU2507745 other downstream 909635 3784507 ~ 3785708 (+) False LOC110521165
TU2507833 other downstream 1035232 3910104 ~ 3910366 (+) True G2192425

Expression Profile