RNA id: TU2507387


Basic Information

Item Value
RNA id TU2507387
length 330
lncRNA type intronic
GC content 0.40
exon number 2
gene id G2192071
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 2969080 ~ 2969652 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttctatgtgttagGTTCCCTGTGTTTAACACTGTattctgtgttctatgtgttaggttccctgtgtttaaccctgtattctgtgttctatgtgttagGTTCCCCTGTGTTCTAACCCTGTATtatgtgttctatgtgttaggTTCCCCATGTTTAACCCTGTattctgtgttctatgtgttagGTTCCCCATGTTTAACCCTGTattctgtgttctatgtgttagGTTCCCCATGTTTAACCTTGTATTCTTTGTTCTATGTGTTAGGTTCCCATGTGTTCTAACCCTGTattctgtgttctatgtgttagGTTCCCCATGTTTAACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2507371 lncRNA upstream 44615 2922901 ~ 2924465 (+) False G2192059
TU2507354 lncRNA upstream 48786 2918842 ~ 2920294 (+) False G2192054
TU2507355 lncRNA upstream 48786 2918842 ~ 2920294 (+) True G2192054
TU2507349 lncRNA upstream 91415 2877183 ~ 2877665 (+) True G2192049
TU2507347 lncRNA upstream 94208 2874566 ~ 2874872 (+) True G2192047
TU2507430 lncRNA downstream 99693 3069345 ~ 3071805 (+) True G2192111
TU2507451 lncRNA downstream 164732 3134384 ~ 3135087 (+) True G2192132
TU2507467 lncRNA downstream 192843 3162495 ~ 3163081 (+) True G2192147
TU2507474 lncRNA downstream 199998 3169650 ~ 3170872 (+) True G2192154
TU2507483 lncRNA downstream 233466 3203118 ~ 3208107 (+) True G2192161
XM_036968631.1 mRNA upstream 53106 2892934 ~ 2915974 (+) False smad3b
XM_036968827.1 mRNA upstream 108378 2811895 ~ 2860702 (+) True smad6b
XM_036969279.1 mRNA downstream 286743 3256395 ~ 3270508 (+) False LOC110522690
XM_036969280.1 mRNA downstream 286743 3256395 ~ 3270508 (+) False LOC110522690
XM_036968561.1 mRNA downstream 300865 3270517 ~ 3271251 (+) True LOC118945764
XM_036969029.1 mRNA downstream 306789 3276441 ~ 3325034 (+) True LOC110521158
XM_036968665.1 mRNA downstream 496644 3466296 ~ 3562699 (+) False tle3a
TU2507374 other upstream 44615 2922901 ~ 2924465 (+) True G2192059
TU2507357 other upstream 59898 2893235 ~ 2909182 (+) True smad3b
TU2507289 other upstream 206108 2760260 ~ 2762972 (+) True G2191994
TU2506803 other upstream 721578 2247064 ~ 2247502 (+) True G2191616
TU2506051 other upstream 1287031 1681554 ~ 1682049 (+) True G2191047
TU2507365 other downstream 70768 3040420 ~ 3052452 (+) True iqch
TU2507745 other downstream 814855 3784507 ~ 3785708 (+) False LOC110521165
TU2507833 other downstream 940452 3910104 ~ 3910366 (+) True G2192425
TU2507856 other downstream 965375 3935027 ~ 3937099 (+) True LOC110521161
TU2508095 other downstream 1597099 4566751 ~ 4576024 (+) True LOC118945757

Expression Profile