RNA id: TU2507467


Basic Information

Item Value
RNA id TU2507467
length 519
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G2192147
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 3162495 ~ 3163081 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGTCTATGCATGCATGTCTGCATAGGTTTGTGATTTAAAATCACAAGCGCATATCCTGCAGTTGGGAAACACGCAACTTGGGCagctgtggaatgcagtgttagATTTTTGAAAAACACAATGGGACACATCTCCTCCACAAAGTTGACTTCAGTTTACCAAAAAAGCACCCGGGTGATCATCAatactcttggaagaatgttctatggacagatgagtcaaaaggATCACGTTTGGGAAGACAtatgtctcaatatgtcttccctgttaaagagacatatgtctcaatatgtcttccctgttaaagactcctgggtctcaatatgtcttccctgttaaagagacatatgtctcaatatgtcttccctgttaaatcaaatcaaatgtatttatatagcccttcgtacatcagctgatatctcaaagtgctgtacagaaatccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtggctaggaaaaactccctagaaaggaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2507451 lncRNA upstream 27408 3134384 ~ 3135087 (+) True G2192132
TU2507430 lncRNA upstream 90690 3069345 ~ 3071805 (+) True G2192111
TU2507387 lncRNA upstream 192843 2969080 ~ 2969652 (+) True G2192071
TU2507371 lncRNA upstream 238030 2922901 ~ 2924465 (+) False G2192059
TU2507354 lncRNA upstream 242201 2918842 ~ 2920294 (+) False G2192054
TU2507474 lncRNA downstream 6569 3169650 ~ 3170872 (+) True G2192154
TU2507483 lncRNA downstream 40037 3203118 ~ 3208107 (+) True G2192161
TU2507490 lncRNA downstream 78004 3241085 ~ 3248840 (+) False G2192166
TU2507491 lncRNA downstream 81727 3244808 ~ 3248840 (+) True G2192166
TU2507508 lncRNA downstream 94935 3258016 ~ 3258713 (+) True LOC110522690
XM_036968629.1 mRNA upstream 109887 2941093 ~ 3052608 (+) False iqch
XM_036968627.1 mRNA upstream 109887 2941094 ~ 3052608 (+) False iqch
XM_036968630.1 mRNA upstream 109887 2941095 ~ 3052608 (+) False iqch
XM_036968628.1 mRNA upstream 109887 2941096 ~ 3052608 (+) False iqch
XM_036968631.1 mRNA upstream 246521 2892934 ~ 2915974 (+) False smad3b
XM_036969279.1 mRNA downstream 93314 3256395 ~ 3270508 (+) False LOC110522690
XM_036969280.1 mRNA downstream 93314 3256395 ~ 3270508 (+) False LOC110522690
XM_036968561.1 mRNA downstream 107436 3270517 ~ 3271251 (+) True LOC118945764
XM_036969029.1 mRNA downstream 113360 3276441 ~ 3325034 (+) True LOC110521158
XM_036968665.1 mRNA downstream 303215 3466296 ~ 3562699 (+) False tle3a
TU2507365 other upstream 110043 3040420 ~ 3052452 (+) True iqch
TU2507374 other upstream 238030 2922901 ~ 2924465 (+) True G2192059
TU2507357 other upstream 253313 2893235 ~ 2909182 (+) True smad3b
TU2507289 other upstream 399523 2760260 ~ 2762972 (+) True G2191994
TU2506803 other upstream 914993 2247064 ~ 2247502 (+) True G2191616
TU2507745 other downstream 621426 3784507 ~ 3785708 (+) False LOC110521165
TU2507833 other downstream 747023 3910104 ~ 3910366 (+) True G2192425
TU2507856 other downstream 771946 3935027 ~ 3937099 (+) True LOC110521161
TU2508095 other downstream 1403670 4566751 ~ 4576024 (+) True LOC118945757
TU2509273 other downstream 1614619 4777700 ~ 4779264 (+) True G2193497

Expression Profile