RNA id: TU2507815


Basic Information

Item Value
RNA id TU2507815
length 1639
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G2192410
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 3876526 ~ 3878264 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGACGTATAGTTACTTATCAATAACTTTATTAGTATCACAACAACAATATTTACATAGACAATGTATCAGTCTATAGAATACATTACAGTAAACATATTTACATAGACAATGTATCAGTCTATAGAATACATTACAGTAAACATATTTACATAGACAATGAGGCAGTttatacaatacattacagtaaaCATAATAACATAGACAATGTTATATCAGTCTATAAAATATAATTACAGTAAACATATTTACATAGAAGATGTATCagtctataaaatatatttacagtAAACTTCATCAGAACTGTTTGTATTTACTGTATATGTCTAACAGTGTTTTATAGGCCCACATACACTTGTAAAATACACAGTGAAGAAGAGTATTTCTAAGTGCTTAGGTTAATGGTATCGTACCCTAATCTCACCGTTCACTCTCTTACACATGTTGCTAGAACAGCTTTGGACCATGGATGAGTCCCTACTGTTTCCGGTTTCCTGTCTATAGAAGTAGAAAGAGGACTGTGGATGGATTTAGAACCcattttagcatggacattgtCATTGAGGGCTTccgccattttaaagtagtcaactggggtGGGGATTTCTATGGGTTGGGAGCCATCTGTCAATGATCAGAGCATTGCCTTCTTCTTCAAAGTGGgttacacatatatatatttttaaatagctTTATGTTACATTACTGCCATCTATTGGCCAAAATAAATTAATGCATTTTCCCCCCAATGTAAAATAAATGGTTCAAAACTCCAGCACTGCAGGTGGCGCTAAATCACCAATATTACACTGGACAAAAACATAAAaaacgcaacatacaacaatttcaacgattttactgaatCATCGTCTGATTTTGATCTGCAggagaagaagccggatgtggaggtcctgggttggcgtggttacaagtagtttgtggttgtgaggccggatggaagtactgccaaattctctaaaatgacgttggaggcggcttatgatagagaaatgaacatttaattctctggcaacagttctggtggacattcctgcagtcagcatgccaattgcacgctctctcaacttgagacatctgtggcgttgtgttgcgtgacaaaactgcacattttagagtggccttttattgtccctagcacaaggtgcacctgtgtaatgatcatgctgtttaatcaggttcttgatataccacacctgtcaggtggatggattatctttgcaaaggagaaatgctcactaacagggatgtcaacAAATCTGtccaaaacatttgagagaaataaggtttttgtgcgtatggaacatttctgtgatcttttatttcagctcatgaaacatgagaccaacactttacatgttgagtttatatttttgttcggtgtagaTAAAAATGCTTTTTATAAAACACAAAATAAGAAGAAAATGTCCCACTTTAAAAATGGAGAAAGTCcacaatggcgctgcccatgatGTCACAACAGCCATTatggcacagatacaaatatAAGCCCTCTGTCTAGCTCTATGTTCCTGTCCTACTTGCAACAGCTCTTCCTGTTGTCTCTGTTGGAGTGGTCAGCTGACAGATGGAGAGTCTCCTCACATTGCTGATCCTGCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2507809 lncRNA upstream 14136 3861013 ~ 3862390 (+) True G2192407
TU2507804 lncRNA upstream 15878 3859813 ~ 3860648 (+) False G2192406
TU2507805 lncRNA upstream 15878 3859813 ~ 3860648 (+) False G2192406
TU2507808 lncRNA upstream 15878 3860298 ~ 3860648 (+) True G2192406
TU2507802 lncRNA upstream 18354 3857911 ~ 3858172 (+) True G2192404
TU2507754 lncRNA downstream 4731 3882995 ~ 3886325 (+) True G2192369
TU2507830 lncRNA downstream 30191 3908455 ~ 3908766 (+) True G2192422
TU2507831 lncRNA downstream 30537 3908801 ~ 3909130 (+) True G2192423
TU2507832 lncRNA downstream 31175 3909439 ~ 3909642 (+) True G2192424
TU2507835 lncRNA downstream 37320 3915584 ~ 3915808 (+) True G2192427
XM_021598596.2 mRNA upstream 45227 3827634 ~ 3831299 (+) False LOC110521164
XR_005040909.1 mRNA upstream 45227 3827634 ~ 3831299 (+) True LOC110521164
XM_036968934.1 mRNA upstream 57750 3813375 ~ 3818776 (+) True LOC118945791
XM_036968728.1 mRNA upstream 80127 3784501 ~ 3796399 (+) False LOC110521165
XM_036968729.1 mRNA upstream 81235 3784499 ~ 3795291 (+) False LOC110521165
XR_005040865.1 mRNA downstream 16888 3895152 ~ 3896777 (+) True LOC118945778
XM_021598587.2 mRNA downstream 52942 3931206 ~ 3937155 (+) False LOC110521161
XM_021598589.2 mRNA downstream 52954 3931218 ~ 3937155 (+) False LOC110521161
XM_021598592.2 mRNA downstream 52954 3931218 ~ 3937155 (+) False LOC110521161
XM_021598591.2 mRNA downstream 52967 3931231 ~ 3937155 (+) False LOC110521161
TU2507745 other upstream 90818 3784507 ~ 3785708 (+) False LOC110521165
TU2507365 other upstream 824074 3040420 ~ 3052452 (+) True iqch
TU2507374 other upstream 952061 2922901 ~ 2924465 (+) True G2192059
TU2507357 other upstream 967344 2893235 ~ 2909182 (+) True smad3b
TU2507289 other upstream 1113554 2760260 ~ 2762972 (+) True G2191994
TU2507833 other downstream 31840 3910104 ~ 3910366 (+) True G2192425
TU2507856 other downstream 56763 3935027 ~ 3937099 (+) True LOC110521161
TU2508095 other downstream 688487 4566751 ~ 4576024 (+) True LOC118945757
TU2509273 other downstream 899436 4777700 ~ 4779264 (+) True G2193497
TU2509359 other downstream 1115138 4993402 ~ 4994620 (+) True LOC110521176

Expression Profile