RNA id: TU2509230


Basic Information

Item Value
RNA id TU2509230
length 229
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G2193461
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 4720826 ~ 4721054 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atggtgttgaacgctgagctgtagtcaacgaatagcattctcacataggtgttccttttgtccaggttggaaagggcagtgtggagtgcaatagagattgtatcatctgtggatctgtttgggcggtatgcaaattggagtgggtctagggtttctgggataatggtgttgatgtgagccattaccaacctttcaaagcacttcatggctacagacgtgagtgctgcgG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2509224 lncRNA upstream 1929 4716393 ~ 4718897 (+) False G2193458
TU2509225 lncRNA upstream 1929 4717849 ~ 4718897 (+) True G2193458
TU2509227 lncRNA upstream 3131 4716393 ~ 4717695 (+) False G2193458
TU2508081 lncRNA upstream 7585 4712275 ~ 4713241 (+) True LOC118945760
TU2508074 lncRNA upstream 7713 4712275 ~ 4713113 (+) False LOC118945760
TU2509231 lncRNA downstream 852 4721906 ~ 4722116 (+) True G2193462
TU2509241 lncRNA downstream 11117 4732171 ~ 4732860 (+) True G2193471
TU2509243 lncRNA downstream 11929 4732983 ~ 4734456 (+) True G2193472
TU2509246 lncRNA downstream 21624 4742678 ~ 4742983 (+) True G2193475
TU2509248 lncRNA downstream 25248 4746302 ~ 4746801 (+) True G2193477
XR_005040852.1 mRNA upstream 11437 4704102 ~ 4709389 (+) False LOC118945760
XM_036968511.1 mRNA upstream 22378 4566366 ~ 4698448 (+) False LOC118945757
XR_005040851.1 mRNA upstream 149863 4570173 ~ 4570963 (+) True LOC118945759
XM_036968532.1 mRNA upstream 188199 4378293 ~ 4532627 (+) True LOC118945758
XM_021598599.2 mRNA upstream 415592 4303164 ~ 4305234 (+) True LOC110521166
XM_036969204.1 mRNA downstream 127102 4848156 ~ 4869652 (+) True LOC110522695
XM_036969365.1 mRNA downstream 165564 4886618 ~ 4947425 (+) False LOC110521175
XM_036969366.1 mRNA downstream 165564 4886618 ~ 4947425 (+) False LOC110521175
XM_036969367.1 mRNA downstream 165565 4886619 ~ 4947425 (+) False LOC110521175
XM_036969368.1 mRNA downstream 165565 4886619 ~ 4947425 (+) False LOC110521175
TU2508095 other upstream 144802 4566751 ~ 4576024 (+) True LOC118945757
TU2507856 other upstream 783727 3935027 ~ 3937099 (+) True LOC110521161
TU2507833 other upstream 810460 3910104 ~ 3910366 (+) True G2192425
TU2507745 other upstream 935118 3784507 ~ 3785708 (+) False LOC110521165
TU2507365 other upstream 1668374 3040420 ~ 3052452 (+) True iqch
TU2509273 other downstream 56646 4777700 ~ 4779264 (+) True G2193497
TU2509359 other downstream 272348 4993402 ~ 4994620 (+) True LOC110521176
TU2509413 other downstream 385004 5106058 ~ 5108156 (+) True G2193611
TU2509427 other downstream 402459 5123513 ~ 5124709 (+) False G2193620
TU2509501 other downstream 477472 5198526 ~ 5200369 (+) True G2193655

Expression Profile