RNA id: TU2509248


Basic Information

Item Value
RNA id TU2509248
length 500
lncRNA type intronic
GC content 0.46
exon number 1
gene id G2193477
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 4746302 ~ 4746801 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggattgagatcagggctttgtgatggccactccaataccttgactttgttgtccttaagccattttgccacaactttggaagtatgcttggggtcattgtccatttggaagacccatttgggaccaagctttaacttcttgactgatgtcttgagatgttgcttcaaaatatctacataattgtctttcctcatgatgccatctattttgtgaagtgcaccagtccgtcctgcagcaaagcacccccacaacatgatgctgccagccctgtgcgtcacggttgggatggtgttcttcggcttgcaagcctccccctttttcctccaaacataacgatggtcattatggtcaaacacttctatttttgtttcatcagaccagagaacatttctccaaaaagtacgatctttgtccccatgtgcagttgcaaaccgtagtctggctttttaatggtggttttggagcagtggcttcttccttgctgagcggcctttcaggtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2509246 lncRNA upstream 3319 4742678 ~ 4742983 (+) True G2193475
TU2509243 lncRNA upstream 11846 4732983 ~ 4734456 (+) True G2193472
TU2509241 lncRNA upstream 13442 4732171 ~ 4732860 (+) True G2193471
TU2509231 lncRNA upstream 24186 4721906 ~ 4722116 (+) True G2193462
TU2509230 lncRNA upstream 25248 4720826 ~ 4721054 (+) True G2193461
TU2509250 lncRNA downstream 3129 4749930 ~ 4750412 (+) True G2193479
TU2509251 lncRNA downstream 4206 4751007 ~ 4751244 (+) True G2193480
TU2509255 lncRNA downstream 10809 4757610 ~ 4758024 (+) True G2193484
TU2509261 lncRNA downstream 17555 4764356 ~ 4764677 (+) True G2193490
TU2509262 lncRNA downstream 18714 4765515 ~ 4765876 (+) True G2193491
XR_005040852.1 mRNA upstream 36913 4704102 ~ 4709389 (+) False LOC118945760
XM_036968511.1 mRNA upstream 47854 4566366 ~ 4698448 (+) False LOC118945757
XR_005040851.1 mRNA upstream 175339 4570173 ~ 4570963 (+) True LOC118945759
XM_036968532.1 mRNA upstream 213675 4378293 ~ 4532627 (+) True LOC118945758
XM_021598599.2 mRNA upstream 441068 4303164 ~ 4305234 (+) True LOC110521166
XM_036969204.1 mRNA downstream 101355 4848156 ~ 4869652 (+) True LOC110522695
XM_036969365.1 mRNA downstream 139817 4886618 ~ 4947425 (+) False LOC110521175
XM_036969366.1 mRNA downstream 139817 4886618 ~ 4947425 (+) False LOC110521175
XM_036969367.1 mRNA downstream 139818 4886619 ~ 4947425 (+) False LOC110521175
XM_036969368.1 mRNA downstream 139818 4886619 ~ 4947425 (+) False LOC110521175
TU2508095 other upstream 170278 4566751 ~ 4576024 (+) True LOC118945757
TU2507856 other upstream 809203 3935027 ~ 3937099 (+) True LOC110521161
TU2507833 other upstream 835936 3910104 ~ 3910366 (+) True G2192425
TU2507745 other upstream 960594 3784507 ~ 3785708 (+) False LOC110521165
TU2507365 other upstream 1693850 3040420 ~ 3052452 (+) True iqch
TU2509273 other downstream 30899 4777700 ~ 4779264 (+) True G2193497
TU2509359 other downstream 246601 4993402 ~ 4994620 (+) True LOC110521176
TU2509413 other downstream 359257 5106058 ~ 5108156 (+) True G2193611
TU2509427 other downstream 376712 5123513 ~ 5124709 (+) False G2193620
TU2509501 other downstream 451725 5198526 ~ 5200369 (+) True G2193655

Expression Profile