RNA id: TCONS_00006089


Basic Information

Item Value
RNA id TCONS_00006089
length 524
lncRNA type sense_over
GC content 0.56
exon number 2
gene id XLOC_002903
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 34737322 ~ 34871737 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gcagCTGCCGACCGACCGACCAGCCTCCTCTGCGGGACAACAAAGGAGGTGCCGGACTCGCATCACATCACGACTCCTGTCAGCACACCTCAACATCTGAATCGTGAGCAGAAACCTTCAATATTCCCTAAATCTTCAGCTTTAGCCCTAATTTGACCGGACGACATGGAGGAGCATTTTGACGAGCGGGACAAACTGCAGCGCAACAGCCGGAGCGCAGGCCGGGCGAACGGGCTCCTCAGCCCCACTCACAGCGCCCACTGCAGCCTTTACCGCACGCGGACCCTCAAAACACTCAGCTCCGAGAAGAAGGCGAAGAAAGTGCGCTTTTACCGCAATGGTGACCGATATTTCAACGGGATCGTGTACGCCATCTCATCGGACCGCATCAGAACCTTTGACGCTCTGCTGGCTGACCTGACCCGAACCCTGTCCGACAACGTCAACCTCCCGCAAGGGGTGCGAATTATCTACTCAATCGATGGCAACAAAAAAATCACCAACATAGATCAGCTGGTGGAAGG

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005364 lncRNA downstream 98078 34767856 ~ 34772211 (-) False XLOC_002903
TCONS_00006088 lncRNA downstream 98078 34767976 ~ 34772211 (-) False XLOC_002903
TCONS_00006087 lncRNA downstream 98134 34752310 ~ 34772155 (-) False XLOC_002903
TCONS_00005773 lncRNA downstream 101616 34768011 ~ 34768673 (-) False XLOC_002903
TCONS_00006086 lncRNA downstream 671723 34196782 ~ 34198566 (-) True XLOC_002900
TCONS_00005367 lncRNA upstream 8911 34880648 ~ 34889020 (-) True XLOC_002904
TCONS_00005372 lncRNA upstream 79323 34951060 ~ 34959178 (-) False XLOC_002906
TCONS_00005373 lncRNA upstream 79494 34951231 ~ 34958024 (-) True XLOC_002906
TCONS_00005377 lncRNA upstream 94027 34965764 ~ 34969903 (-) False XLOC_002907
TCONS_00005378 lncRNA upstream 94027 34965764 ~ 34976723 (-) False XLOC_002907
TCONS_00005365 mRNA downstream 2888 34767856 ~ 34867401 (-) False XLOC_002903
TCONS_00005363 mRNA downstream 98076 34744472 ~ 34772213 (-) False XLOC_002903
TCONS_00005360 mRNA downstream 98078 34737322 ~ 34772211 (-) False XLOC_002903
TCONS_00005359 mRNA downstream 128551 34737322 ~ 34741738 (-) False XLOC_002903
TCONS_00005356 mRNA downstream 627020 34220492 ~ 34243269 (-) False XLOC_002901
TCONS_00005366 mRNA upstream 458 34872195 ~ 34889053 (-) False XLOC_002904
TCONS_00005368 mRNA upstream 17591 34889328 ~ 34907477 (-) False XLOC_002905
TCONS_00005369 mRNA upstream 34243 34905980 ~ 34916208 (-) False XLOC_002905
TCONS_00005370 mRNA upstream 36599 34908336 ~ 34915984 (-) False XLOC_002905
TCONS_00005371 mRNA upstream 40153 34911890 ~ 34915886 (-) True XLOC_002905
TCONS_00005358 other downstream 542895 34327262 ~ 34327394 (-) True XLOC_002902
TCONS_00005343 other downstream 836868 34032283 ~ 34033421 (-) True XLOC_002893
TCONS_00005331 other downstream 1493075 33377130 ~ 33377214 (-) True XLOC_002885
TCONS_00005330 other downstream 1493203 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005329 other downstream 1493348 33376818 ~ 33376941 (-) True XLOC_002883
TCONS_00005381 other upstream 112881 34984618 ~ 34992414 (-) False XLOC_002907
TCONS_00005403 other upstream 498100 35369837 ~ 35387242 (-) True XLOC_002918
TCONS_00005406 other upstream 748596 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005408 other upstream 782508 35654245 ~ 35654354 (-) True XLOC_002923
TCONS_00005410 other upstream 1291442 36163179 ~ 36163294 (-) True XLOC_002926

Expression Profile

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