RNA id: TU2512083



Basic Information


Item Value
RNA id TU2512083
length 3651
lncRNA type read_through
GC content 0.44
exon number 4
gene id G2195608
representative False

Chromosome Information


Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 7008465 ~ 7091710 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tggtcaaaagaagtgcaccctattccctggtcaaaagaagtgcgccctattccctattggccctggtcaaaagaagtgcgtcctattccctattggccctggtaaAAATAAGTGCGCCCTattccctggtcaaaagaagtgcgtcatattccctattggccctggtcaaaagtagtgcactccatagggtgccatttgggagacataTTATAGTTGCACTGCAGATGTGTTACATGAGAAACgctaaacaaaaaaaaacaaggggTAAGTAAACGTCATTCCAAAACTTCCACATCAGTTCATAAGAGCAATTTATACTTtacacagtataatacagtaatcCTTCTTATTAGtacacaaaacaaaaaaaacaacaaaaaaaaaatagatatttaGCCCAACATTCTTGGTATACAAGGTGAAAAACACAGAACCTCCCCACTGTTTATATGTTCAGCCAAGCCTTGTATTCTACCTCCCAAACGTCAGCTTATTTGACCTAAGCCctactaaaaaaaaaaagtagttcactatataaaAGGAAATAGGGGTGTCATCTGGGACATGCATAAGATGTTATTACTTTTCCAGGACAAGGAAGATCCCCCTCCAAATAGTGAACTGTGTTTCAATTTAGGAAGCTATAGAATTTAGAATATAttaccctcttcctggagatctaccgtcctgtaggttcactACGAATTAACTGCTCAACAAGACCGTAACAAGATGAATCAAAACCAATAAATTATGGTTGGACTAAAAACCTACAGGTCAGTAGATCTCCAGgcagagggttggactgaaaacctacaggtcAGTAGATCTCCAGgcagagggttggactgaaaacctacaggtcAGTAGATCTCCAGgcagagggttggactgaaaacccacaggacagtagatctccaggcagagggttggactgaaaaccaacaggacagtagatctccaggcagagggttggactgaaaacccacaggacagtagatctccaggcagagggttggactgaaaacccacaggacagtagatctccaggcagagggttggactgaaaacccacaggacagtagatctccaggcaGAGGGTGGGACTGaaaaccaacaggacagtagatctccaggcaGAGGGTGGGACTGaaaaccaacaggacagtagatctccaggcagagggttggactgaaaacctacaggacagtagatctccaggcaGAGGGTTGTGCTGCCTTGCTATAGCCCAATGAAAACACTGTCCTGTAATAATAACATGATCGATTGAAAACATACAATTGTGTAAGTCTCACAAATGCTTCAACCTCCAATGAAAGCTGACTATAGTAAACTGACTACTAACTAGTAACTGAAGGAGGGTGTTTGTCTGAGGGAGAGGTAAAAAATTTAAATCAGAGCTTTACAAGTTTGGTGCAGGAATGGATAGAGTGAACGGTACATAGCCACAGCATCTTTCATCCCTCTACGTCTCATGTGTGTTGTGCCACGGAAGCCTCGTATACTACGCTCTAGCCTGGTTGGTCCCAGGTATGTTTTGTGCGGTCTTGCCAAGTCCTGTGGCATTTTGGAAAGAACGCAcaaaacagatctggaaccaccAGTGTCTTTAAACGCAGTACAACAAGTGGTCGCCATGTCACGAGCAGACCCACCAACCACCAAATAAAAACACTGGATTGTTATCTACTCATAAAGGCCTCTTAATGTTAGCATGGCGCTAACCACTCTCTACAGGGTTGCATTAGCAGAGCTAACGATAACTTTAGATGGCTATCTATACCTTTAACGGTGCAAGTCGAAGAACAGCGCGTTGTGAAAGAGAACGAGAAGGAATATTAACCTCAGTGTCGGTTGGGAGAAACGAAACTATCCTAGTTTGCATTCCATACGAATAAAACAAGAGGGTCATAATGCTTATACAACACCcagatccaaaatggcaccccattccctatatagtgcactatgaagaGAATACAGTGCTATGTCAGACACAACACCTAGATCCAAAATGGcatcccattccctatatagtgcactatgaagaGAATACAGTGCTATGTCAGACACAACACCtagatccaaaatggcaccccattcccaaGATACTGCAATATTTTAGACCAGGGACCAATAGAGCTCttgtcaaaaagtagtgcactatgtagggaatagggtgccgtttgagacAGACACAAAACCTTCTGGCCTCACACCAGAGACATCCTCCTGCATTCTGAGACATCAGCCTGTGGCCGGTAAGCACACCTGTTCTGCCCCCCCCCAATGTTATATTTAAGACAGGTACATGGATTTACAAAATGACAGGTGGAGCCCAGTTCAACTATAGTACATGAATAATATTCGGACTGGGTGTGGTGACTGGAGATCAATAGCTGCATGCTACAGGACAGCAAGGAGATGGTATTAAGTGATTCCCTATATCAGGACTGCCCAAACCTCTTCcaggagatctactgtcctgtggggttttcagtccaaccctattTTAAAACCCACCTGttcaacaagaccttaactagctgaatcagaactgctaaattagggttgggctgaaaacctacaggacagtagatctccaggaagagggttgggctgaaaacctacaggacagtagatctccaggaagtgggttgggcagccctgggcTACATAGTTTACTGCTTTTGCCCAACCATTTATCTGAAACCCATAGCAACGATGCTTTGCTTTATTTCTAAGAGCTTGGTCAACATTCTATGTTTGTattcccatagggccctggtcaaaagtagtttagTGTGTAGGAAATAGGACGTTATTTAGGACAGAACCTCAGACTCAGTTTAAAGCCCCTCCTGCATCCTAGTCACACACCATTTTGTCACCAATCTGGCTCATGGGACATTAAAACAAGCCAGCAAGTACAATTACAATTTTAAGCGTATAATATTTTAACAATGCCTGCAATTTGTACCAGTAAATATTACACAAAGTGAGGAGGAATAAGGAGCAGTGTCACGAAAGATGACATCACtgaaacatcatcatcatcatcatcatcatcttcgcTTTAAATTCAAACAGTCACCTCAGAGCGTTCAGTTAAATCCCACTGACCATGCCGTGGCTGTAAGGTCAGAGCTGACAGAGTCACACTAAAAACAGAGAAGGACATGGCTACGAACAAACCAACTAGCTCTCGTCTTGTCAGAACatcagtgttctctctctctctctctctatcccaggaGAAACAGATGGTGATTTTATGGTCAAGCCCACGTTGTCACACCAGCGTATgtacagaagaagaaaaacattCTCCACATTTTTAAGCGAAGGGAAAACAAGAACCTTTCTGcgtagagaaaaaaaaaagatgtgcACGATGCCCTCAGTCTCCACAAACACGGCCCTCAGAGGAAGTGGAGTGATGTGAGAGCgacggggacggggacgggggggggggggctagcctGTTGTTGGACCAGGCAGAGATACTGGTTAACTGAGCCGACGACGACGACAGGCGAGATGGAAGAATTTTGTCAGTTGGTTTCCAGGAGAAAAATTATTTACTTACTCCTGATAAGTCAGAAGGGAgaaaatagtccccccccccc

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU2512089 lncRNA downstream 321 7008074 ~ 7008425 (-) True G2195612
TU2512088 lncRNA downstream 6313 7002106 ~ 7002433 (-) True G2195611
TU2512087 lncRNA downstream 6658 7001742 ~ 7002088 (-) True G2195610
TU2512051 lncRNA downstream 10598 6997833 ~ 6998148 (-) True G2195607
TU2512049 lncRNA downstream 14744 6993780 ~ 6994002 (-) True G2195605
TU2512092 lncRNA upstream 2550 7094260 ~ 7098002 (-) True G2195614
TU2512096 lncRNA upstream 6796 7098506 ~ 7102542 (-) False G2195615
TU2512097 lncRNA upstream 6796 7098506 ~ 7102542 (-) False G2195615
TU2512098 lncRNA upstream 6796 7098506 ~ 7102542 (-) False G2195615
TU2512099 lncRNA upstream 6796 7098506 ~ 7102542 (-) False G2195615
XM_036968679.1 mRNA downstream 54232 6947745 ~ 6954514 (-) False LOC110521226
XM_036969065.1 mRNA downstream 137362 6862281 ~ 6871384 (-) False LOC110521222
XM_036969066.1 mRNA downstream 137362 6862281 ~ 6871384 (-) True LOC110521222
XM_036969067.1 mRNA downstream 137363 6862281 ~ 6871383 (-) False LOC110521222
XM_036969068.1 mRNA downstream 137365 6862281 ~ 6871381 (-) False LOC110521222
XM_036968620.1 mRNA upstream 1016822 8108532 ~ 8125363 (-) True LOC118945775
XM_036968760.1 mRNA upstream 1196096 8287806 ~ 8378637 (-) False LOC110522722
XM_036968761.1 mRNA upstream 1196096 8287806 ~ 8378637 (-) False LOC110522722
XM_036968762.1 mRNA upstream 1197655 8289365 ~ 8378637 (-) False LOC110522722
XM_036968763.1 mRNA upstream 1197655 8289365 ~ 8378637 (-) False LOC110522722
TU2511793 other downstream 372795 6635330 ~ 6635951 (-) True G2195405
TU2511183 other downstream 779532 6226346 ~ 6229214 (-) False G2194918
TU2511212 other downstream 793393 6213738 ~ 6215353 (-) True LOC110522707
TU2511206 other downstream 795718 6208862 ~ 6213028 (-) False LOC110522707
TU2510850 other downstream 1172484 5831301 ~ 5836262 (-) True LOC110521194
TU2512293 other upstream 155024 7246734 ~ 7264708 (-) False G2195750
TU2512297 other upstream 172092 7263802 ~ 7270413 (-) True G2195750
TU2512347 other upstream 193483 7285193 ~ 7285671 (-) True G2195796
TU2513452 other upstream 1000991 8092701 ~ 8093996 (-) True G2196731
TU2513455 other upstream 1007961 8099671 ~ 8107053 (-) False G2196733

Expression Profile


TU2512083 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.25.
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TU2512083 Expression in each Bioproject

Bar chart with 13 bars.
TU2512083 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 5.
End of interactive chart.