RNA id: TU2517958


Basic Information

Item Value
RNA id TU2517958
length 988
lncRNA type antisense_over
GC content 0.56
exon number 1
gene id G2200675
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 12468557 ~ 12469544 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGAGGAAGGCCATTGCCTCGTCTCTGTAGCCCAGGCGTGTGTACACGAATGTGGGCAGATCATAGCTGTGTGAGGTGAGCCCAGCTATCCTCAGAGATTCCAGCACCCTAAACTGGGAGAAATGGAGATTGCTGACACTGTCTGTTTGGCTCTTCCTGATAGCCACTGAGGGAAACAGTGCTGTGCTGCTGTTCCACAACCAGAGCAGTTCGTCATTACGCAGGCTCTCCAGCAGAGGGCAGGAGCCTGTGTAGTTGTGCTCATACAGGTTGTAGTTGTGGCAGTCCGGATAGAGGTAGAAGCCCCAGAGTCCGTTGGGGCGAAGGAACGTCCCTAGCTGGACAGTCTTCTGCATGAACGCACGGGCACTCTTCTCAAAGCGTTTGCTCGCCAGCTCTTCGATTTGTGATGAAGTCACATTAACATATGCCTGTGTGATCAGCTCCCGGGACTTCCGCCGGTAAATGTCTTTCTTGTGCCAGTTGCGGTTCCACTGTGGGCGCCAGTACTCCCAGTCAATGACCGCCAGACCGGCAAAGTCCTCCGAGGGGATAAAATGGTTGATATCCCTGTAGGCCTTGAGGAGATGGTCATTCATGTTGCAGTTTTGGGGCAGGCCTCCATTGATAGGGATGCTGTGGTCCGTGTAGAAAGGGTAGAGGCCTAGCCGGTTGGCATAGAAAATGGTAACGTTCTGGCCAGTGTGGACGGCCCGCGGACTGCCACTAATGTGGAAGAGGTGCTCCAGGTTGGTGTGGACATTGTACTTGACAGTGCAGAGGTCCAGCGGTGCGTTCCAGGCAGCGATGAAGGGCTTGCGGCCCACCAGGGGCAGTTTGGCAGGCTTCTGGCTGAAGGCGGCATGAAAGAATAGCAGGAGCCAGGAACAGGTGAGGGCGCAGGCCACAGGCACGGCGTGGTGAGGTTGGCCACTTCCAACGGGCACCATGAGCATCCTGGAGCTTGGGTCAATGGGAAGGGCTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2517992 lncRNA upstream 4020 12464222 ~ 12464537 (+) True G2200708
TU2517979 lncRNA upstream 28018 12440312 ~ 12440539 (+) True G2200696
TU2517977 lncRNA upstream 30005 12438319 ~ 12438552 (+) True G2200694
TU2517970 lncRNA upstream 39239 12428887 ~ 12429318 (+) True G2200687
TU2517898 lncRNA upstream 149491 12318851 ~ 12319066 (+) True G2200626
TU2518002 lncRNA downstream 18316 12487860 ~ 12488061 (+) True G2200718
TU2518011 lncRNA downstream 35341 12504885 ~ 12505262 (+) True G2200727
TU2518012 lncRNA downstream 37184 12506728 ~ 12507019 (+) True G2200728
TU2518021 lncRNA downstream 50132 12519676 ~ 12520269 (+) True G2200737
TU2518024 lncRNA downstream 52438 12521982 ~ 12522317 (+) True G2200739
XM_021598829.2 mRNA upstream 44979 12415118 ~ 12423578 (+) False LOC110521334
XM_021598830.2 mRNA upstream 44979 12415118 ~ 12423578 (+) True LOC110521334
XM_021598828.2 mRNA upstream 66754 12374030 ~ 12401803 (+) False pot1
XM_036968596.1 mRNA upstream 66754 12374030 ~ 12401803 (+) True pot1
XM_036968595.1 mRNA upstream 66891 12373613 ~ 12401666 (+) False pot1
XM_036968916.1 mRNA downstream 58068 12527612 ~ 12545633 (+) False LOC110521338
XM_036968915.1 mRNA downstream 58069 12527613 ~ 12545633 (+) True LOC110521338
XM_021598837.2 mRNA downstream 117429 12586973 ~ 12609390 (+) True slc13a1
XM_036969260.1 mRNA downstream 152790 12622334 ~ 12890397 (+) False cadps2
XM_036969261.1 mRNA downstream 152790 12622334 ~ 12890397 (+) False cadps2
TU2517439 other upstream 671622 11737102 ~ 11796935 (+) True LOC110521323
TU2517440 other upstream 671939 11736474 ~ 11796618 (+) False LOC110521323
TU2515932 other upstream 1323885 11144213 ~ 11144672 (+) True G2198837
TU2515724 other upstream 1590768 10868361 ~ 10877789 (+) False LOC110521306
TU2515291 other upstream 2244440 10221650 ~ 10224117 (+) True G2198247
TU2519632 other downstream 731594 13201138 ~ 13201491 (+) True G2202196
TU2519728 other downstream 822692 13292236 ~ 13295160 (+) False LOC110521355
TU2519759 other downstream 966264 13435808 ~ 13462187 (+) True tnnt3a
TU2521265 other downstream 2089903 14559447 ~ 14567103 (+) True G2203653
TU2521639 other downstream 2802501 15272045 ~ 15273733 (+) True G2203973

Expression Profile