RNA id: TU2518286


Basic Information

Item Value
RNA id TU2518286
length 336
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G2200965
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 12902137 ~ 12902472 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atagtggtcctggatggcaggcaacttagccccagtgatgtactgggccgttcgcactaccctctgtagtgccttgcggtcggaggccgagcagttgtcataccaggcagtgatgcaaccagtcaggatgctctcgatggtgcagctgtagaaccttttgaggatctgaagacccatgccaaatctttttagtgtcctgagggggaataggctttgtcgtgccctcttcacgactgtcttggtgtgcttggaccatgttagtttgttggtgatgtggacaccaaggaacttgaagctctcaacctgctccactacagccccgacgatgagaatggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2518282 lncRNA upstream 4309 12897553 ~ 12897828 (+) True G2200961
TU2518184 lncRNA upstream 143017 12758825 ~ 12759120 (+) True G2200879
TU2518180 lncRNA upstream 148941 12752681 ~ 12753196 (+) True G2200875
TU2518177 lncRNA upstream 156248 12743808 ~ 12745889 (+) True G2200873
TU2518045 lncRNA upstream 324349 12577435 ~ 12577788 (+) True G2200760
TU2518288 lncRNA downstream 871 12903343 ~ 12903560 (+) True G2200967
TU2519463 lncRNA downstream 151295 13053767 ~ 13053972 (+) True G2202043
TU2519466 lncRNA downstream 153249 13055721 ~ 13055936 (+) True G2202046
TU2519486 lncRNA downstream 186687 13089159 ~ 13089377 (+) True G2202066
TU2519506 lncRNA downstream 204965 13107437 ~ 13107769 (+) True G2202085
XM_021598838.2 mRNA upstream 5340 12893320 ~ 12896797 (+) True LOC110521342
XM_036969265.1 mRNA upstream 11740 12622334 ~ 12890397 (+) False cadps2
NM_001124530.1 mRNA downstream 3677 12906149 ~ 12921316 (+) True aass
XM_036968933.1 mRNA downstream 154558 13057030 ~ 13073884 (+) False LOC110521345
XM_021598844.2 mRNA downstream 154871 13057343 ~ 13073884 (+) True LOC110521345
XM_021598380.2 mRNA downstream 209235 13111707 ~ 13114914 (+) False bet1l
XM_036968401.1 mRNA downstream 210262 13112734 ~ 13114914 (+) False bet1l
TU2517439 other upstream 1105202 11737102 ~ 11796935 (+) True LOC110521323
TU2517440 other upstream 1105519 11736474 ~ 11796618 (+) False LOC110521323
TU2515932 other upstream 1757465 11144213 ~ 11144672 (+) True G2198837
TU2515724 other upstream 2024348 10868361 ~ 10877789 (+) False LOC110521306
TU2515291 other upstream 2678020 10221650 ~ 10224117 (+) True G2198247
TU2519632 other downstream 298666 13201138 ~ 13201491 (+) True G2202196
TU2519728 other downstream 389764 13292236 ~ 13295160 (+) False LOC110521355
TU2519759 other downstream 533336 13435808 ~ 13462187 (+) True tnnt3a
TU2521265 other downstream 1656975 14559447 ~ 14567103 (+) True G2203653
TU2521639 other downstream 2369573 15272045 ~ 15273733 (+) True G2203973

Expression Profile