RNA id: TCONS_00005373


Basic Information

Item Value
RNA id TCONS_00005373
length 460
lncRNA type antisense
GC content 0.51
exon number 2
gene id XLOC_002906
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 34951060 ~ 34959178 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATTCGAGCACCCCTAAAATGAACGAAATTGTATTAGATTAAAAATATCAACCTGCCAAAACAACAGCAACACATCAAAGTCGACAACGGCACCATTTTAAGCTGACTTGATTCCCTCACAAACAAAAATATCAGGATTAACCGTCCCCTCAGAAACCTCAGGACAGCGAGGACACGGTGGATCTCTGTGAGGAAATGCTGCAGATCTCCATGTTGGTGAAGGAGCTGCCGGCGTCGCTGCTGCATTCTGGgtaggaggagctggaggagatGATGTTCTTCAGCCGGTGGAGAGCGATGATGAGGAGGGTGAGCAGGAACAGAAGCAGGCTGAGGAAGATGGAGATGTAGACGTAAACATTAGCAGTCCGTCCGTAGGAGGCAGCGGCCACTCCGGTGGACACGGACACTGTAGGGCTGAAGCGCAGGAAACTCTGGCTGTTCACTTCTGTCGCGTTGT

Function

GO:

id name namespace
GO:0032869 cellular response to insulin stimulus biological_process
GO:0032870 cellular response to hormone stimulus biological_process
GO:0071375 cellular response to peptide hormone stimulus biological_process
GO:0071417 cellular response to organonitrogen compound biological_process
GO:0043434 response to peptide hormone biological_process
GO:1901652 response to peptide biological_process
GO:1901653 cellular response to peptide biological_process
GO:0008286 insulin receptor signaling pathway biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDART00000154518

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005367 lncRNA downstream 62211 34880648 ~ 34889020 (-) True XLOC_002904
TCONS_00006089 lncRNA downstream 79494 34870289 ~ 34871737 (-) True XLOC_002903
TCONS_00005364 lncRNA downstream 179020 34767856 ~ 34772211 (-) False XLOC_002903
TCONS_00005377 lncRNA upstream 7740 34965764 ~ 34969903 (-) False XLOC_002907
TCONS_00005378 lncRNA upstream 7740 34965764 ~ 34976723 (-) False XLOC_002907
TCONS_00005382 lncRNA upstream 26594 34984618 ~ 34992428 (-) True XLOC_002907
TCONS_00006090 lncRNA upstream 96257 35054281 ~ 35058444 (-) True XLOC_002909
TCONS_00005392 lncRNA upstream 201986 35160010 ~ 35164291 (-) True XLOC_002912
TCONS_00005369 mRNA downstream 35023 34905980 ~ 34916208 (-) False XLOC_002905
TCONS_00005370 mRNA downstream 35247 34908336 ~ 34915984 (-) False XLOC_002905
TCONS_00005371 mRNA downstream 35345 34911890 ~ 34915886 (-) True XLOC_002905
TCONS_00005368 mRNA downstream 43754 34889328 ~ 34907477 (-) False XLOC_002905
TCONS_00005366 mRNA downstream 62178 34872195 ~ 34889053 (-) False XLOC_002904
TCONS_00005374 mRNA upstream 2727 34960751 ~ 34976812 (-) False XLOC_002907
TCONS_00005375 mRNA upstream 3580 34961604 ~ 34981028 (-) False XLOC_002907
TCONS_00005376 mRNA upstream 3580 34961604 ~ 34981219 (-) False XLOC_002907
TCONS_00005379 mRNA upstream 22462 34980486 ~ 35002459 (-) False XLOC_002907
TCONS_00005380 mRNA upstream 26593 34984617 ~ 35002731 (-) False XLOC_002907
TCONS_00005358 other downstream 623837 34327262 ~ 34327394 (-) True XLOC_002902
TCONS_00005343 other downstream 917810 34032283 ~ 34033421 (-) True XLOC_002893
TCONS_00005331 other downstream 1574017 33377130 ~ 33377214 (-) True XLOC_002885
TCONS_00005330 other downstream 1574145 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005329 other downstream 1574290 33376818 ~ 33376941 (-) True XLOC_002883
TCONS_00005381 other upstream 26594 34984618 ~ 34992414 (-) False XLOC_002907
TCONS_00005403 other upstream 411813 35369837 ~ 35387242 (-) True XLOC_002918
TCONS_00005406 other upstream 662309 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005408 other upstream 696221 35654245 ~ 35654354 (-) True XLOC_002923
TCONS_00005410 other upstream 1205155 36163179 ~ 36163294 (-) True XLOC_002926

Expression Profile

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