RNA id: TU2520595



Basic Information


Item Value
RNA id TU2520595
length 286
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G2203069
representative True

Chromosome Information


Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 14040770 ~ 14041055 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agtgatcacaatatagtagccatatctaggaaaaccaaagttccaaaggctaggcctactatagtGTATAAGAAGTCATacaagttttgtagtgattcatatgttgatggtgtaaagaatatttgctggtctgtggtgtataatgaggagcaaccagacgctgcacttgacagatttatgaaattgcttattccagttactaataagcctgcacccattaagaaaatgactgtaaaaactgttaaatccccttggattgatgaggaattgaaaaatggtatggttg

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU2520584 lncRNA downstream 15173 14024351 ~ 14025597 (-) True G2203058
TU2520582 lncRNA downstream 29764 14010695 ~ 14011006 (-) True G2203056
TU2520581 lncRNA downstream 32250 14005456 ~ 14008520 (-) True G2203055
TU2520549 lncRNA downstream 124437 13916032 ~ 13916333 (-) True G2203024
TU2520540 lncRNA downstream 125207 13915279 ~ 13915563 (-) True G2203015
TU2520600 lncRNA upstream 6492 14047547 ~ 14048491 (-) True G2203074
TU2520601 lncRNA upstream 8556 14049611 ~ 14049837 (-) True G2203075
TU2520602 lncRNA upstream 9086 14050141 ~ 14050585 (-) True G2203076
TU2520858 lncRNA upstream 73327 14114382 ~ 14145257 (-) True G2203312
TU2520873 lncRNA upstream 85425 14126480 ~ 14167433 (-) True G2203326
XM_021598905.2 mRNA downstream 49400 13982925 ~ 13991370 (-) False cnot2
XM_036969117.1 mRNA upstream 200116 14241171 ~ 14283128 (-) False LOC110522742
XM_036969116.1 mRNA upstream 200116 14241171 ~ 14299085 (-) False LOC110522742
XM_036969114.1 mRNA upstream 200116 14241171 ~ 14299086 (-) False LOC110522742
XM_036969115.1 mRNA upstream 200116 14241171 ~ 14299086 (-) False LOC110522742
XM_036969111.1 mRNA upstream 200116 14241171 ~ 14299087 (-) False LOC110522742
TU2520586 other downstream 28258 14011153 ~ 14012512 (-) True G2203060
TU2520518 other downstream 143072 13862504 ~ 13897698 (-) True si:ch211-106e7.2
TU2520391 other downstream 369790 13667214 ~ 13670980 (-) True urahb
TU2519576 other downstream 942467 13098030 ~ 13098303 (-) True LOC110521347
TU2519561 other downstream 953247 13080596 ~ 13087523 (-) True LOC110521346
TU2520927 other upstream 133386 14174441 ~ 14244462 (-) True G2203363
TU2521808 other upstream 483909 14524964 ~ 14525468 (-) True G2204129
TU2521869 other upstream 586039 14627094 ~ 14629178 (-) False G2204181
TU2521887 other upstream 586039 14627094 ~ 14629178 (-) False G2204181
TU2521871 other upstream 587194 14628249 ~ 14629178 (-) True G2204181

Expression Profile


TU2520595 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
End of interactive chart.

TU2520595 Expression in each Bioproject

Bar chart with 19 bars.
TU2520595 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.