RNA id: TCONS_00005374


Basic Information

Item Value
RNA id TCONS_00005374
length 2691
RNA type mRNA
GC content 0.45
exon number 6
gene id XLOC_002907
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 34960751 ~ 35002731 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCACTCCTCTACCTCCATCACATCGCTCTTCTCCTTCACCAGTCCGGCTGTGAAGCGTCTGCTCGGCTGGAAGCAAGGAGACGAGGAGGAAAAGTGGGCCGAAAAGGCTGTCGATTCCCTCGTGAAGAAGCTGAAGAAGAAGAAAGGAGCGATGGAGGAACTGGAAAAGGCTCTTAGCTGTCCAGGTCAGCCCAGTAAATGCGTGACCATCCCTCGCTCTCTAGACGGAAGGCTCCAGGTGTCTCATCGGAAAGGTTTGCCTCATGTTATTTACTGTAGAGTGTGGCGCTGGCCCGACCTTCAGTCCCACCATGAGCTCAAAGCGCTCGACTGCTGCGAGTTTCCATTCGGATCCAAGCAGAAGGAGATCTGCATCAACCCATATCATTACCGCCGCGTCGAGACGCCAGTTCTACCGCCGGTGCTAGTGCCCCGTCACAGTGAGTTCAACCCTCAGCACAGCCTGCTGGCCAAGTTCAGAAATGCTTCCCTCCACAACGAGCCTCTGATGCCCCAAAATGCCACTTTCCCCGACTCCTTCCCTGCGATGCCCTGCAGCTCCTTCTCTTCATCTCCCTCCAGCTCTTTAAACCCATCTCCCGCTGCGCACAGCTTCCCAAACTCTCCCAGCAGCGCCACTGAGCCCGGCAGCCCTTACCAGATCACAGCTGAGACGCCTCCTCCACCGTACAGTATGATGGAGAGCAGTCCGTCTGAAGACGTGAAGCCCGCAGAGTCTTCAGAGAATAAACTCATCCTGACGGCTCCACAAAGAGACTTGAGGCCAGTGTGTTATGAAGAACCAGAATATTGGTGTTCGGTGGCGTATTATGAACTCAACAACAGGGTTGGTGAGACATTTCACGCCTCTGCCCGAAGCATCTTAGTGGACGGTTTCACAGATCCATCAAACAACAAGAACCGCTTCTGTCTCGGCCTGCTGTCCAACGTCAACCGCAACTCCACCATCGAGCACACGCGCAGACACATAGGAAAAGGTGTGCACTTGTATTATGTGGGAGGAGAGGTGTACGCAGAGTGTCTGAGTGACTCCAGTATTTTCGTTCAGAGTCGGAACTGTAACTATCAGCACGGTTTTCACCCCACCACCGTCTGCAAGATCCCGAGTGGATGCAGCCTGAAGATCTTCAACAACCAGCTGTTTGCCCAGCTGCTCTCACAGTCGGTAAACCACGGCTTTGAAGTGGTGTATGAACTCACCAAGATGTGCACCATCAGGATGAGTTTCGTCAAGGGCTGGGGAGCCGAGTACCACCGTCAGGACGTCACCAGCACCCCCTGCTGGATAGAAATCCACCTGCACGGGCCCCTGCAGTGGCTGGACAAAGTTCTGACCCAAATGGGCTCCCCACACAACCCCATTTCCTCGGTGTCCTAATACAATACAGGAGACAATTCTCCAATAGACTTCATAGCCACGCAAGACACATagcactctctctcactctcttgtGAAAATATATGTCTTTAGTGGATGTTTATGGTACCGTTATAGGATCAGCCTGAAAATACGTACAATATCATGCTGTTAACTAAGCAGTCGTGTTATTAGATAAGTGTTGCATTGTTTTAAATGGCTACATAAAAAACACTACTACTTGACAGTATGTAATAGCTGAGATCTAATAGGAAGCCAAAGAAATGTGCTAGTAGGCAGGTACTTGTTCTGACAGTGTTTTATTTGCCATATGCCGTCTATAACGTTTAAACTTAGCTGTCTTGTTTTTGTAATACAAAACAAATGCCTCCTTTTTATTTGTGCCTTTTTGATTTTTGACCtgaacacaaatataatattaaaaacaaacaaaagttgaGATGTCTACTCGCTTTTCAAGCTAAAAACTGTCATTCATAAATATCAGAGGATctgtaaaaatgcatttgattGCTTTAGcagacttaaaaataataataaagcagacTGAACACaacataggctgtttttttctgcTTTACAATTAACAAGATGTGGATGggcaagttaaaaaaaatctcaaagagATTTGATCAGTAACACTATCATAGAATACATTAAGATCATTGAATTGATGAATGTTCTCtagtgttcattaaaaatccTAACTGACCTCATGTGGACGAACAGAATTGTACAGTAGATTTAGCTGCTGATTTGTTTCATGATATGAAAGCTCTTCACGGATGAGATCCTGCAGTTTTGCTGATAGTCTCCACTGCATTCAGGACCACTGCAGGTACCCCATGCTGACAGCATCAATATGCAGTATtcacaaaaaatgttaaaaagggaCTGTATGAAATGTTGGTCAGCTTCAGTGTTCAGAAGTTGTGCTGTGTTTGAGAGCGGTTCTGCGTGGTCAGTAAACGCTGCTGCAGCTGGAGGAAACTGATGACTTCTGGACTCCTCAGCAGAGActgaaaagcaaaaacaacacaacatcaGCTGCTGGTAAGTCACTTTGCTAAGAGTTCATAAGTTGAGTTTGAGAAATATTAAGGACATCTGTAATGCATTCAAATATGCAAAACTTGGTTTAAAAGAATATAAAAGCAATATAGcataggcagacagacagataaatctgagtatttaaaattatattaatgttGTCAGCTAAGAGGAAAATATCTAATTCACCTATTCAGCTACATAGTTactatactttttaaaaagaatattcttaaa

Function

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0061515 myeloid cell development biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
ko04350 TGF-beta signaling pathway
ko04550 Signaling pathways regulating pluripotency of stem cells

ZFIN:

id description
ZDB-GENE-031014-1 Predicted to enable DNA binding activity and metal ion binding activity. Acts upstream of or within dorsal/ventral pattern formation; myeloid cell development; and negative regulation of transcription, DNA-templated. Predicted to be located in cytoplasm and nucleus. Predicted to be part of transcription regulator complex. Is expressed in several structures, including cardiovascular system; gut; nervous system; optic vesicle; and periderm. Used to study arteriovenous malformations of the brain. Human ortholog(s) of this gene implicated in primary pulmonary hypertension. Orthologous to human SMAD9 (SMAD family member 9).

Ensembl:

ensembl_id ENSDART00000170625

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005372 lncRNA downstream 1573 34951060 ~ 34959178 (-) False XLOC_002906
TCONS_00005373 lncRNA downstream 2727 34951231 ~ 34958024 (-) True XLOC_002906
TCONS_00005367 lncRNA downstream 71731 34880648 ~ 34889020 (-) True XLOC_002904
TCONS_00006089 lncRNA downstream 89014 34870289 ~ 34871737 (-) True XLOC_002903
TCONS_00005364 lncRNA downstream 188540 34767856 ~ 34772211 (-) False XLOC_002903
TCONS_00005382 lncRNA upstream 7806 34984618 ~ 34992428 (-) True XLOC_002907
TCONS_00006090 lncRNA upstream 77469 35054281 ~ 35058444 (-) True XLOC_002909
TCONS_00005392 lncRNA upstream 183198 35160010 ~ 35164291 (-) True XLOC_002912
TCONS_00005401 lncRNA upstream 336080 35312892 ~ 35321637 (-) True XLOC_002917
TCONS_00006091 lncRNA upstream 452692 35429504 ~ 35431655 (-) True XLOC_002919
TCONS_00005369 mRNA downstream 44543 34905980 ~ 34916208 (-) False XLOC_002905
TCONS_00005370 mRNA downstream 44767 34908336 ~ 34915984 (-) False XLOC_002905
TCONS_00005371 mRNA downstream 44865 34911890 ~ 34915886 (-) True XLOC_002905
TCONS_00005368 mRNA downstream 53274 34889328 ~ 34907477 (-) False XLOC_002905
TCONS_00005366 mRNA downstream 71698 34872195 ~ 34889053 (-) False XLOC_002904
TCONS_00005379 mRNA upstream 3674 34980486 ~ 35002459 (-) False XLOC_002907
TCONS_00005380 mRNA upstream 7805 34984617 ~ 35002731 (-) False XLOC_002907
TCONS_00005384 mRNA upstream 35282 35012094 ~ 35051691 (-) False XLOC_002908
TCONS_00005383 mRNA upstream 35282 35012094 ~ 35051691 (-) False XLOC_002908
TCONS_00005385 mRNA upstream 35282 35012094 ~ 35052198 (-) False XLOC_002908
TCONS_00005358 other downstream 633357 34327262 ~ 34327394 (-) True XLOC_002902
TCONS_00005343 other downstream 927330 34032283 ~ 34033421 (-) True XLOC_002893
TCONS_00005331 other downstream 1583537 33377130 ~ 33377214 (-) True XLOC_002885
TCONS_00005330 other downstream 1583665 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005329 other downstream 1583810 33376818 ~ 33376941 (-) True XLOC_002883
TCONS_00005381 other upstream 7806 34984618 ~ 34992414 (-) False XLOC_002907
TCONS_00005403 other upstream 393025 35369837 ~ 35387242 (-) True XLOC_002918
TCONS_00005406 other upstream 643521 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005408 other upstream 677433 35654245 ~ 35654354 (-) True XLOC_002923
TCONS_00005410 other upstream 1186367 36163179 ~ 36163294 (-) True XLOC_002926

Expression Profile

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