RNA id: TU2521404


Basic Information

Item Value
RNA id TU2521404
length 206
lncRNA type intronic
GC content 0.49
exon number 1
gene id G2203759
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 14857135 ~ 14857340 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTCACTCAGCTGCCTGTGGCCTGCAACACTCTCAACTCACATCTTTCCGGCCCTCCCCTCCACTCACTCAGCTGCCTGCCTCACTGCCTAATAGTCTGcagcagcaggtcacagtgaaatCAATCATGTTTTTTTAAGAGAAATGCCATGGCAGCTGCGGTGCAATTTCGAAGTAGCCCAAAAAAATGCAACTAATACATTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2521340 lncRNA upstream 6323 14848301 ~ 14850812 (+) True G2203695
TU2521341 lncRNA upstream 9093 14846664 ~ 14848042 (+) True LOC110521393
TU2521403 lncRNA upstream 12590 14844337 ~ 14844545 (+) True G2203758
TU2521358 lncRNA upstream 12852 14843665 ~ 14844283 (+) True G2203713
TU2521361 lncRNA upstream 66075 14788371 ~ 14791060 (+) True G2203716
TU2521409 lncRNA downstream 12728 14870068 ~ 14870286 (+) True G2203762
TU2521417 lncRNA downstream 22906 14880246 ~ 14880464 (+) True G2203770
TU2521586 lncRNA downstream 309313 15166653 ~ 15211610 (+) True G2203925
TU2521618 lncRNA downstream 411648 15268988 ~ 15271120 (+) True LOC110521405
TU2521643 lncRNA downstream 419914 15277254 ~ 15278241 (+) True G2203977
XM_021598925.2 mRNA upstream 9951 14780910 ~ 14847184 (+) False LOC110521393
XM_036968538.1 mRNA upstream 9951 14780910 ~ 14847184 (+) False LOC110521393
XM_036968539.1 mRNA upstream 9951 14818121 ~ 14847184 (+) False LOC110521393
XR_005040879.1 mRNA upstream 84414 14761128 ~ 14772721 (+) True LOC118945780
XM_036968911.1 mRNA upstream 429616 14383407 ~ 14427519 (+) True LOC110521391
XM_021598926.2 mRNA downstream 4823 14862163 ~ 14868180 (+) True cdkn1bb
LOC110521404 mRNA downstream 308937 15166277 ~ 15181233 (+) True LOC110521404
XR_005041048.1 mRNA downstream 327824 15185164 ~ 15185354 (+) True LOC118945892
XM_021598931.2 mRNA downstream 348441 15205781 ~ 15215520 (+) True LOC110521401
XM_021598929.2 mRNA downstream 369584 15226924 ~ 15236089 (+) True LOC110521400
TU2521265 other upstream 290032 14559447 ~ 14567103 (+) True G2203653
TU2519759 other upstream 1394948 13435808 ~ 13462187 (+) True tnnt3a
TU2519728 other upstream 1561975 13292236 ~ 13295160 (+) False LOC110521355
TU2519632 other upstream 1655644 13201138 ~ 13201491 (+) True G2202196
TU2517439 other upstream 3060200 11737102 ~ 11796935 (+) True LOC110521323
TU2521639 other downstream 414705 15272045 ~ 15273733 (+) True G2203973
TU2523362 other downstream 1372831 16230171 ~ 16232396 (+) True G2205546
TU2524044 other downstream 2306297 17163637 ~ 17164159 (+) True G2206179
TU2524133 other downstream 2318077 17175417 ~ 17175872 (+) False G2206268
TU2524135 other downstream 2318077 17175417 ~ 17175812 (+) True G2206268

Expression Profile